Gene annotation
Transcriptome id Sobic.009G102400.1
Synonym PCK1, lateral organ boundaries, Sb09g016240, SbLBD30, ASL5, LBD12
Functional annotation "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment" (PubMedID : 20499123)
DUF260 domain containing protein, putative, expressed
UniProt C5YWA0
Pfam PF03195
Panther DB PTHR31301 PTHR31301:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G30130 : Lateral organ boundaries (LOB) domain family protein
RAP-DB (Rice) LOC_Os05g27980.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a007545 , Zm00025a017194 , Zm00025a043472
Brachypodium KQK13888
Barley HORVU4Hr1G002480.1 , HORVU4Hr1G002480.2 , HORVU1Hr1G060290.4 , HORVU1Hr1G060290.1 , HORVU1Hr1G060290.2 , HORVU1Hr1G060290.3
Wheat TraesCS1B02G235700 , TraesCS4B02G016200 , TraesCS4A02G297500 , TraesCS1D02G224000 , TraesCS4D02G014600 , TraesCS1A02G222300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G124200 expressed protein -
2 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage
3 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
4 Sobic.010G155100 NAC domain containing protein, putative, expressed -
5 Sobic.010G134900 DNA binding protein, putative, expressed -
6 Sobic.010G177300 receptor-like protein kinase 2 precursor, putative, expressed -
7 Sobic.006G013300 receptor-like protein kinase 2 precursor, putative, expressed -
8 Sobic.005G105600 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
9 Sobic.004G112200 no apical meristem protein, putative, expressed -
10 Sobic.007G186600 resistance protein, putative, expressed -
11 Sobic.003G019400 expressed protein -
12 Sobic.002G239700 receptor-like protein kinase 2 precursor, putative, expressed -
13 Sobic.003G395200 AML1, putative, expressed -
14 Sobic.002G230900 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
15 Sobic.003G419300 xylanase inhibitor, putative, expressed -
16 Sobic.008G077900 exostosin family domain containing protein, expressed -
17 Sobic.009G208600 POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
18 Sobic.003G419400 xylanase inhibitor, putative, expressed -
19 Sobic.002G076700 IPP transferase, putative, expressed K10760: adenylate dimethylallyltransferase (cytokinin synthase)
20 Sobic.006G205500 glycosyl hydrolases family 16, putative, expressed -


Gene co-expression network
sample Sobic009G102400 Sobic009G102400 Sobic006G124200 Sobic006G124200 Sobic009G102400--Sobic006G124200 Sobic004G214300 Sobic004G214300 Sobic009G102400--Sobic004G214300 Sobic001G261400 Sobic001G261400 Sobic009G102400--Sobic001G261400 Sobic010G155100 Sobic010G155100 Sobic009G102400--Sobic010G155100 Sobic010G134900 Sobic010G134900 Sobic009G102400--Sobic010G134900 Sobic010G177300 Sobic010G177300 Sobic009G102400--Sobic010G177300 Sobic006G013300 Sobic006G013300 Sobic009G102400--Sobic006G013300 Sobic005G105600 Sobic005G105600 Sobic009G102400--Sobic005G105600 Sobic004G112200 Sobic004G112200 Sobic009G102400--Sobic004G112200 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic006G124200--Sobic001G261400 Sobic006G124200--Sobic005G105600 Sobic006G124200--Sobic006G013300 Sobic006G124200--Sobic010G134900 Sobic003G019400 Sobic003G019400 Sobic006G124200--Sobic003G019400 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200 Sobic004G214300--Sobic009G102400 Sobic004G214300--Sobic006G124200 Sobic004G214300--Sobic010G155100 Sobic004G214300--Sobic010G134900 Sobic004G214300--Sobic001G261400 Sobic003G419300 Sobic003G419300 Sobic004G214300--Sobic003G419300 Sobic004G214300--Sobic003G019400 Sobic002G239700 Sobic002G239700 Sobic004G214300--Sobic002G239700 Sobic004G214300--Sobic004G112200 Sobic001G261400--Sobic010G134900 Sobic001G261400--Sobic004G214300 Sobic001G261400--Sobic009G102400 Sobic004G263700 Sobic004G263700 Sobic001G261400--Sobic004G263700 Sobic002G230900 Sobic002G230900 Sobic001G261400--Sobic002G230900 Sobic001G261400--Sobic006G124200 Sobic002G218600 Sobic002G218600 Sobic001G261400--Sobic002G218600 Sobic001G261400--Sobic010G177300 Sobic001G261400--Sobic010G155100 Sobic010G155100--Sobic004G214300 Sobic010G155100--Sobic009G102400 Sobic010G155100--Sobic004G112200 Sobic010G155100--Sobic001G261400 Sobic010G155100--Sobic010G134900 Sobic006G205500 Sobic006G205500 Sobic010G155100--Sobic006G205500 Sobic010G155100--Sobic002G239700 Sobic010G155100--Sobic006G124200 Sobic010G155100--Sobic003G019400 Sobic010G134900--Sobic001G261400 Sobic010G134900--Sobic004G214300 Sobic010G134900--Sobic009G102400 Sobic010G134900--Sobic006G124200 Sobic010G134900--Sobic003G419300 Sobic010G134900--Sobic010G155100 Sobic010G134900--Sobic002G239700 Sobic010G134900--Sobic004G112200 Sobic003G419400 Sobic003G419400 Sobic010G134900--Sobic003G419400 Sobic010G177300--Sobic001G261400 Sobic010G177300--Sobic009G102400 Sobic010G177300--Sobic004G214300 Sobic010G177300--Sobic006G124200 Sobic010G177300--Sobic010G134900 Sobic010G177300--Sobic002G218600 Sobic010G177300--Sobic010G155100 Sobic005G025900 Sobic005G025900 Sobic010G177300--Sobic005G025900 Sobic004G233700 Sobic004G233700 Sobic010G177300--Sobic004G233700 Sobic009G208600 Sobic009G208600 Sobic006G013300--Sobic009G208600 Sobic006G013300--Sobic005G105600 Sobic002G232900 Sobic002G232900 Sobic006G013300--Sobic002G232900 Sobic004G029900 Sobic004G029900 Sobic006G013300--Sobic004G029900 Sobic001G508200 Sobic001G508200 Sobic006G013300--Sobic001G508200 Sobic003G419500 Sobic003G419500 Sobic006G013300--Sobic003G419500 Sobic005G021000 Sobic005G021000 Sobic006G013300--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic006G013300--Sobic004G347500 Sobic002G240000 Sobic002G240000 Sobic006G013300--Sobic002G240000 Sobic005G105600--Sobic006G013300 Sobic005G105600--Sobic009G208600 Sobic005G105600--Sobic004G029900 Sobic005G105600--Sobic002G232900 Sobic005G105600--Sobic004G347500 Sobic005G105600--Sobic003G419500 Sobic005G105600--Sobic005G021000 Sobic005G105600--Sobic006G124200 Sobic005G105600--Sobic001G508200 Sobic009G058600 Sobic009G058600 Sobic004G112200--Sobic009G058600 Sobic003G324600 Sobic003G324600 Sobic004G112200--Sobic003G324600 Sobic004G112200--Sobic002G239700 Sobic004G112200--Sobic003G419300 Sobic004G112200--Sobic004G214300 Sobic001G232000 Sobic001G232000 Sobic004G112200--Sobic001G232000 Sobic001G307600 Sobic001G307600 Sobic004G112200--Sobic001G307600 Sobic004G112200--Sobic010G155100 Sobic008G077900 Sobic008G077900 Sobic004G112200--Sobic008G077900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.