Gene annotation
| Transcriptome id | Sobic.007G186600.1 |
|---|---|
| Synonym | Sb07g025650, RPS3, RPM1 |
| Functional annotation | resistance protein, putative, expressed |
| UniProt | A0A1Z5RBN6 |
| Pfam | PF00931 |
| Panther DB | PTHR23155 PTHR23155:SF529 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT3G07040 : NB-ARC domain-containing disease resistance protein |
|---|---|
| RAP-DB (Rice) | LOC_Os08g42670.1 : resistance protein, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | PNT72119 |
| Barley | HORVU1Hr1G002850.7 , HORVU1Hr1G002850.5 , HORVU1Hr1G002850.8 , HORVU1Hr1G002850.6 , HORVU1Hr1G002850.9 , HORVU7Hr1G021680.2 , HORVU7Hr1G021680.1 , HORVU1Hr1G002850.11 , HORVU1Hr1G002850.12 , HORVU1Hr1G002850.14 , HORVU1Hr1G002850.15 |
| Wheat | TraesCS1D02G019700 , TraesCSU02G103700 , TraesCS7A02G101700 , TraesCS7B02G501600 , TraesCS7A02G101700 , TraesCS6B02G460000 , TraesCS1A02G021800 , TraesCS7D02G096000 , TraesCS6A02G027600 , TraesCS6A02G025000 , TraesCS7B02G502300 , TraesCSU02G059400 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G013300 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 2 | Sobic.009G102400 | "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed | - |
| 3 | Sobic.004G214300 | AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 4 | Sobic.006G124200 | expressed protein | - |
| 5 | Sobic.010G155100 | NAC domain containing protein, putative, expressed | - |
| 6 | Sobic.001G508200 | multidrug resistance-associated protein, putative, expressed | - |
| 7 | Sobic.005G105600 | stripe rust resistance protein Yr10, putative, expressed | K13457: RPM1, disease resistance protein RPM1 |
| 8 | Sobic.009G208600 | POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 9 | Sobic.004G114600 | expressed protein | - |
| 10 | Sobic.001G261400 | STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed | - |
| 11 | Sobic.010G177300 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 12 | Sobic.004G029900 | "transporter for metal ion into cytoplasm, an influx transporter for Al"(PubMedID : 28716414)@metal transporter Nramp6, putative, expressed | - |
| 13 | Sobic.009G171400 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
| 14 | Sobic.003G419500 | xylanase inhibitor, putative, expressed | - |
| 15 | Sobic.002G232900 | helix-loop-helix DNA-binding protein, putative, expressed | - |
| 16 | Sobic.002G413200 | glucosyltransferase, putative, expressed | - |
| 17 | Sobic.010G134900 | DNA binding protein, putative, expressed | - |
| 18 | Sobic.002G062100 | exostosin family protein, putative, expressed | - |
| 19 | Sobic.006G034300 | Transketolase(PubMedID : 26186930)@"Transketolase, putative (Os)"(PubMedID : 27208977)@Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@transketolase, chloroplast precursor, putative, expressed | K00615: E2.2.1.1, tktA, transketolase |
| 20 | Sobic.002G230900 | cyclin, putative, expressed | K18810: cyclin D1/2/4, plant |
Gene co-expression network
Octagon: transcription factors
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