Gene annotation
Transcriptome id Sobic.004G029900.1
Synonym NRAMP1, ATNRAMP1, Sb04g002610, SbNrat1, PMIT1
Functional annotation "transporter for metal ion into cytoplasm, an influx transporter for Al" (PubMedID : 28716414)
metal transporter Nramp6, putative, expressed
UniProt A0A194YMG4
Pfam PF01566
Panther DB PTHR11706 PTHR11706:SF48
NCBI CDD KOG1291; Mn2+ and Fe2+ transporters of the NRAMP family
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006810transport GO:0005215transporter activity


Orthologs (automatic annotation)
TAIR AT1G80830 : natural resistance-associated macrophage protein 1
RAP-DB (Rice) LOC_Os02g03900.1 : metal transporter Nramp6, putative, expressed
MaizeGDB (Corn) Zm00025a018845
Brachypodium -
Barley -
Wheat TraesCSU02G077000 , TraesCSU02G077000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G208600 POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
2 Sobic.005G105600 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
3 Sobic.006G013300 receptor-like protein kinase 2 precursor, putative, expressed -
4 Sobic.002G232900 helix-loop-helix DNA-binding protein, putative, expressed -
5 Sobic.003G419500 xylanase inhibitor, putative, expressed -
6 Sobic.003G281100 B3 DNA binding domain containing protein, expressed -
7 Sobic.005G021000 AP2 domain containing protein, expressed K09285: OVM, AP2-like factor, ANT lineage
8 Sobic.001G254800 cytochrome P450, putative, expressed -
9 Sobic.002G240000 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
10 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
11 Sobic.002G062100 exostosin family protein, putative, expressed -
12 Sobic.005G054900 acyl-CoA synthetase protein, putative, expressed K01897: ACSL, long-chain acyl-CoA synthetase
13 Sobic.001G254700 TPD1, putative, expressed -
14 Sobic.004G091600 ethylene receptor, putative, expressed K14509: ETR, ethylene receptor
15 Sobic.003G443400 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
16 Sobic.005G126701 - -
17 Sobic.007G025600 amino acid transporter, putative, expressed -
18 Sobic.007G008500 basic helix-loop-helix family protein, putative, expressed -
19 Sobic.002G177600 expressed protein -
20 Sobic.010G198900 phytosulfokines 1 precursor, putative, expressed -


Gene co-expression network
sample Sobic004G029900 Sobic004G029900 Sobic009G208600 Sobic009G208600 Sobic004G029900--Sobic009G208600 Sobic005G105600 Sobic005G105600 Sobic004G029900--Sobic005G105600 Sobic006G013300 Sobic006G013300 Sobic004G029900--Sobic006G013300 Sobic002G232900 Sobic002G232900 Sobic004G029900--Sobic002G232900 Sobic003G419500 Sobic003G419500 Sobic004G029900--Sobic003G419500 Sobic003G281100 Sobic003G281100 Sobic004G029900--Sobic003G281100 Sobic005G021000 Sobic005G021000 Sobic004G029900--Sobic005G021000 Sobic001G254800 Sobic001G254800 Sobic004G029900--Sobic001G254800 Sobic002G240000 Sobic002G240000 Sobic004G029900--Sobic002G240000 Sobic009G208600--Sobic006G013300 Sobic009G208600--Sobic005G105600 Sobic009G208600--Sobic002G232900 Sobic009G208600--Sobic003G419500 Sobic009G208600--Sobic004G029900 Sobic009G208600--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic009G208600--Sobic004G347500 Sobic009G208600--Sobic001G254800 Sobic009G208600--Sobic002G240000 Sobic005G105600--Sobic006G013300 Sobic005G105600--Sobic009G208600 Sobic005G105600--Sobic004G029900 Sobic005G105600--Sobic002G232900 Sobic005G105600--Sobic004G347500 Sobic005G105600--Sobic003G419500 Sobic005G105600--Sobic005G021000 Sobic006G124200 Sobic006G124200 Sobic005G105600--Sobic006G124200 Sobic001G508200 Sobic001G508200 Sobic005G105600--Sobic001G508200 Sobic006G013300--Sobic009G208600 Sobic006G013300--Sobic005G105600 Sobic006G013300--Sobic002G232900 Sobic006G013300--Sobic004G029900 Sobic006G013300--Sobic001G508200 Sobic006G013300--Sobic003G419500 Sobic006G013300--Sobic005G021000 Sobic006G013300--Sobic004G347500 Sobic006G013300--Sobic002G240000 Sobic002G232900--Sobic009G208600 Sobic002G232900--Sobic006G013300 Sobic002G232900--Sobic005G021000 Sobic002G232900--Sobic001G254800 Sobic002G232900--Sobic003G419500 Sobic002G232900--Sobic004G347500 Sobic002G232900--Sobic004G029900 Sobic002G232900--Sobic002G240000 Sobic002G232900--Sobic005G105600 Sobic003G419500--Sobic009G208600 Sobic009G250500 Sobic009G250500 Sobic003G419500--Sobic009G250500 Sobic003G419500--Sobic002G232900 Sobic010G131500 Sobic010G131500 Sobic003G419500--Sobic010G131500 Sobic003G419500--Sobic005G021000 Sobic003G398200 Sobic003G398200 Sobic003G419500--Sobic003G398200 Sobic003G437400 Sobic003G437400 Sobic003G419500--Sobic003G437400 Sobic009G025500 Sobic009G025500 Sobic003G419500--Sobic009G025500 Sobic003G419500--Sobic006G013300 Sobic003G281100--Sobic004G029900 Sobic003G281100--Sobic009G208600 Sobic003G281100--Sobic005G105600 Sobic003G281100--Sobic006G013300 Sobic003G281100--Sobic002G232900 Sobic003G281100--Sobic003G419500 Sobic003G281100--Sobic002G240000 Sobic003G281100--Sobic005G021000 Sobic002G119200 Sobic002G119200 Sobic003G281100--Sobic002G119200 Sobic005G021000--Sobic001G254800 Sobic006G217800 Sobic006G217800 Sobic005G021000--Sobic006G217800 Sobic003G443400 Sobic003G443400 Sobic005G021000--Sobic003G443400 Sobic007G025600 Sobic007G025600 Sobic005G021000--Sobic007G025600 Sobic008G149300 Sobic008G149300 Sobic005G021000--Sobic008G149300 Sobic001G534200 Sobic001G534200 Sobic005G021000--Sobic001G534200 Sobic009G103800 Sobic009G103800 Sobic005G021000--Sobic009G103800 Sobic006G167700 Sobic006G167700 Sobic005G021000--Sobic006G167700 Sobic001G166900 Sobic001G166900 Sobic005G021000--Sobic001G166900 Sobic001G254800--Sobic007G025600 Sobic001G254800--Sobic009G103800 Sobic001G254800--Sobic006G167700 Sobic002G184700 Sobic002G184700 Sobic001G254800--Sobic002G184700 Sobic001G344300 Sobic001G344300 Sobic001G254800--Sobic001G344300 Sobic004G349550 Sobic004G349550 Sobic001G254800--Sobic004G349550 Sobic001G254800--Sobic001G534200 Sobic010G198900 Sobic010G198900 Sobic001G254800--Sobic010G198900 Sobic001G254800--Sobic001G166900 Sobic002G240000--Sobic005G021000 Sobic002G240000--Sobic001G254800 Sobic002G240000--Sobic001G534200 Sobic002G240000--Sobic008G149300 Sobic009G246250 Sobic009G246250 Sobic002G240000--Sobic009G246250 Sobic006G083900 Sobic006G083900 Sobic002G240000--Sobic006G083900 Sobic010G053400 Sobic010G053400 Sobic002G240000--Sobic010G053400 Sobic002G240000--Sobic007G025600 Sobic002G240000--Sobic004G349550
Octagon: transcription factors


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