Gene annotation
| Transcriptome id | Sobic.002G232900.1 |
|---|---|
| Synonym | Sb02g027210 |
| Functional annotation | helix-loop-helix DNA-binding protein, putative, expressed |
| UniProt | C5X314 |
| Pfam | PF00010 |
| Panther DB | PTHR11969 PTHR11969:SF22 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G72210 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os09g29360.1 : helix-loop-helix DNA-binding protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a001021 , Zm00025a047332 , Zm00025a014121 , Zm00025a022171 , Zm00025a004941 |
| Brachypodium | KQJ90584 , PNT64756 , KQJ98697 |
| Barley | HORVU5Hr1G070000.9 , HORVU5Hr1G070000.8 , HORVU5Hr1G070000.1 , HORVU5Hr1G070000.2 , HORVU5Hr1G070000.3 , HORVU5Hr1G070000.4 , HORVU5Hr1G070000.5 , HORVU5Hr1G070000.6 , HORVU5Hr1G070000.7 , HORVU6Hr1G081120.2 , HORVU6Hr1G081120.3 , HORVU6Hr1G081120.5 , HORVU6Hr1G081120.6 , HORVU6Hr1G081120.1 , HORVU6Hr1G081120.4 |
| Wheat | TraesCS6D02G294900 , TraesCS6D02G315200 , TraesCS5B02G245900 , TraesCS6A02G315700 , TraesCS6A02G335500 , TraesCS5A02G248200 , TraesCS5D02G255100 , TraesCS4D02G302700 , TraesCS6B02G346100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G208600 | POEI52 - Pollen Ole e I allergen and extensin family protein precursor, expressed | - |
| 2 | Sobic.006G013300 | receptor-like protein kinase 2 precursor, putative, expressed | - |
| 3 | Sobic.005G021000 | AP2 domain containing protein, expressed | K09285: OVM, AP2-like factor, ANT lineage |
| 4 | Sobic.001G254800 | cytochrome P450, putative, expressed | - |
| 5 | Sobic.003G419500 | xylanase inhibitor, putative, expressed | - |
| 6 | Sobic.004G347500 | 2-phosphoglycerate kinase-related, putative, expressed | - |
| 7 | Sobic.004G029900 | "transporter for metal ion into cytoplasm, an influx transporter for Al"(PubMedID : 28716414)@metal transporter Nramp6, putative, expressed | - |
| 8 | Sobic.002G240000 | expressed protein | K19307: 25S rRNA (uracil2634-N3)-methyltransferase |
| 9 | Sobic.005G105600 | stripe rust resistance protein Yr10, putative, expressed | K13457: RPM1, disease resistance protein RPM1 |
| 10 | Sobic.005G126701 | - | - |
| 11 | Sobic.007G025600 | amino acid transporter, putative, expressed | - |
| 12 | Sobic.010G198900 | phytosulfokines 1 precursor, putative, expressed | - |
| 13 | Sobic.006G217800 | helix-loop-helix DNA-binding domain containing protein, expressed | - |
| 14 | Sobic.001G298032 | - | - |
| 15 | Sobic.003G443400 | glycerol-3-phosphate dehydrogenase, putative, expressed | K00006: glycerol-3-phosphate dehydrogenase (NAD+) |
| 16 | Sobic.009G103800 | "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 17 | Sobic.007G008500 | basic helix-loop-helix family protein, putative, expressed | - |
| 18 | Sobic.009G025500 | OsRCI2-7 - Putative low temperature and salt responsive protein, expressed | - |
| 19 | Sobic.002G062100 | exostosin family protein, putative, expressed | - |
| 20 | Sobic.001G166900 | B3 DNA binding domain containing protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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