Gene annotation
Transcriptome id Sobic.002G230900.1
Synonym 2, Sb02g027020, CYCD4
Functional annotation cyclin, putative, expressed
UniProt C5X2Z6
Pfam PF02984 PF00134
Panther DB PTHR10177 PTHR10177:SF213
NCBI CDD -
KEGG Orthology K18810; cyclin D1/2/4, plant
Gene Ontology GO:0005634; nucleus


Orthologs (automatic annotation)
TAIR AT5G10440 : cyclin d4;2
RAP-DB (Rice) LOC_Os09g29100.1 : cyclin, putative, expressed
MaizeGDB (Corn) Zm00025a047318 , Zm00025a005468 , Zm00025a014104
Brachypodium KQJ90574
Barley -
Wheat TraesCS5D02G253200 , TraesCS5B02G244100 , TraesCS5D02G253500 , TraesCS5D02G253500 , TraesCS5A02G247000 , TraesCS5A02G247000 , TraesCS5B02G243900 , TraesCS5A02G246800 , TraesCS5A02G246800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G261400 STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
2 Sobic.002G218600 Disease resistance/zinc finger/chromosome condensation-like region protein, putative, expressed -
3 Sobic.004G311600 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
4 Sobic.007G218100 transmembrane receptor, putative, expressed -
5 Sobic.001G304800 expressed protein -
6 Sobic.004G263700 expressed protein -
7 Sobic.006G013300 receptor-like protein kinase 2 precursor, putative, expressed -
8 Sobic.006G073800 DUF623 domain containing protein, expressed -
9 Sobic.006G124200 expressed protein -
10 Sobic.006G247800 peroxidase precursor, putative, expressed K00430: peroxidase
11 Sobic.003G196000 expressed protein -
12 Sobic.009G052200 dihydrolipoyl dehydrogenase, putative, expressed K00382: DLD, lpd, dihydrolipoamide dehydrogenase
13 Sobic.010G134900 DNA binding protein, putative, expressed -
14 Sobic.003G350400 thaumatin, putative, expressed -
15 Sobic.005G105600 stripe rust resistance protein Yr10, putative, expressed K13457: RPM1, disease resistance protein RPM1
16 Sobic.009G102400 "domain confirmed by Pfam database, expressed in root, expression induced by BR treatment"(PubMedID : 20499123)@DUF260 domain containing protein, putative, expressed -
17 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
18 Sobic.001G112500 ZF-HD protein dimerisation region containing protein, expressed -
19 Sobic.004G347500 2-phosphoglycerate kinase-related, putative, expressed -
20 Sobic.004G214300 AP2-like ethylene-responsive transcription factor PLETHORA 2, putative, expressed K09285: OVM, AP2-like factor, ANT lineage


Gene co-expression network
sample Sobic002G230900 Sobic002G230900 Sobic001G261400 Sobic001G261400 Sobic002G230900--Sobic001G261400 Sobic002G218600 Sobic002G218600 Sobic002G230900--Sobic002G218600 Sobic004G311600 Sobic004G311600 Sobic002G230900--Sobic004G311600 Sobic007G218100 Sobic007G218100 Sobic002G230900--Sobic007G218100 Sobic001G304800 Sobic001G304800 Sobic002G230900--Sobic001G304800 Sobic004G263700 Sobic004G263700 Sobic002G230900--Sobic004G263700 Sobic006G013300 Sobic006G013300 Sobic002G230900--Sobic006G013300 Sobic006G073800 Sobic006G073800 Sobic002G230900--Sobic006G073800 Sobic006G124200 Sobic006G124200 Sobic002G230900--Sobic006G124200 Sobic010G134900 Sobic010G134900 Sobic001G261400--Sobic010G134900 Sobic004G214300 Sobic004G214300 Sobic001G261400--Sobic004G214300 Sobic009G102400 Sobic009G102400 Sobic001G261400--Sobic009G102400 Sobic001G261400--Sobic004G263700 Sobic001G261400--Sobic002G230900 Sobic001G261400--Sobic006G124200 Sobic001G261400--Sobic002G218600 Sobic010G177300 Sobic010G177300 Sobic001G261400--Sobic010G177300 Sobic010G155100 Sobic010G155100 Sobic001G261400--Sobic010G155100 Sobic002G218600--Sobic004G263700 Sobic002G218600--Sobic001G261400 Sobic009G146250 Sobic009G146250 Sobic002G218600--Sobic009G146250 Sobic007G113300 Sobic007G113300 Sobic002G218600--Sobic007G113300 Sobic002G218600--Sobic002G230900 Sobic006G120600 Sobic006G120600 Sobic002G218600--Sobic006G120600 Sobic010G103700 Sobic010G103700 Sobic002G218600--Sobic010G103700 Sobic002G218600--Sobic001G304800 Sobic003G179500 Sobic003G179500 Sobic002G218600--Sobic003G179500 Sobic006G247800 Sobic006G247800 Sobic004G311600--Sobic006G247800 Sobic002G286700 Sobic002G286700 Sobic004G311600--Sobic002G286700 Sobic006G255300 Sobic006G255300 Sobic004G311600--Sobic006G255300 Sobic003G350400 Sobic003G350400 Sobic004G311600--Sobic003G350400 Sobic003G196000 Sobic003G196000 Sobic004G311600--Sobic003G196000 Sobic001G276800 Sobic001G276800 Sobic004G311600--Sobic001G276800 Sobic004G311600--Sobic002G230900 Sobic007G097100 Sobic007G097100 Sobic004G311600--Sobic007G097100 Sobic004G139900 Sobic004G139900 Sobic004G311600--Sobic004G139900 Sobic001G532800 Sobic001G532800 Sobic007G218100--Sobic001G532800 Sobic007G218100--Sobic001G304800 Sobic004G052200 Sobic004G052200 Sobic007G218100--Sobic004G052200 Sobic002G230800 Sobic002G230800 Sobic007G218100--Sobic002G230800 Sobic003G246800 Sobic003G246800 Sobic007G218100--Sobic003G246800 Sobic006G275500 Sobic006G275500 Sobic007G218100--Sobic006G275500 Sobic002G392500 Sobic002G392500 Sobic007G218100--Sobic002G392500 Sobic001G104500 Sobic001G104500 Sobic007G218100--Sobic001G104500 Sobic008G159901 Sobic008G159901 Sobic007G218100--Sobic008G159901 Sobic002G296000 Sobic002G296000 Sobic001G304800--Sobic002G296000 Sobic001G304800--Sobic002G286700 Sobic008G083500 Sobic008G083500 Sobic001G304800--Sobic008G083500 Sobic009G101100 Sobic009G101100 Sobic001G304800--Sobic009G101100 Sobic006G105600 Sobic006G105600 Sobic001G304800--Sobic006G105600 Sobic001G304800--Sobic007G218100 Sobic001G304800--Sobic003G246800 Sobic001G304800--Sobic009G146250 Sobic006G124400 Sobic006G124400 Sobic001G304800--Sobic006G124400 Sobic001G260701 Sobic001G260701 Sobic004G263700--Sobic001G260701 Sobic004G263700--Sobic001G261400 Sobic004G263700--Sobic002G218600 Sobic004G233700 Sobic004G233700 Sobic004G263700--Sobic004G233700 Sobic004G263700--Sobic001G304800 Sobic004G263700--Sobic007G113300 Sobic004G263700--Sobic002G230900 Sobic004G263700--Sobic006G073800 Sobic004G029450 Sobic004G029450 Sobic004G263700--Sobic004G029450 Sobic009G208600 Sobic009G208600 Sobic006G013300--Sobic009G208600 Sobic005G105600 Sobic005G105600 Sobic006G013300--Sobic005G105600 Sobic002G232900 Sobic002G232900 Sobic006G013300--Sobic002G232900 Sobic004G029900 Sobic004G029900 Sobic006G013300--Sobic004G029900 Sobic001G508200 Sobic001G508200 Sobic006G013300--Sobic001G508200 Sobic003G419500 Sobic003G419500 Sobic006G013300--Sobic003G419500 Sobic005G021000 Sobic005G021000 Sobic006G013300--Sobic005G021000 Sobic004G347500 Sobic004G347500 Sobic006G013300--Sobic004G347500 Sobic002G240000 Sobic002G240000 Sobic006G013300--Sobic002G240000 Sobic006G073800--Sobic006G255300 Sobic006G073800--Sobic004G263700 Sobic006G073800--Sobic002G230900 Sobic006G073800--Sobic001G261400 Sobic006G073800--Sobic001G276800 Sobic006G073800--Sobic002G218600 Sobic006G073800--Sobic001G304800 Sobic006G016700 Sobic006G016700 Sobic006G073800--Sobic006G016700 Sobic006G073800--Sobic004G311600 Sobic006G124200--Sobic009G102400 Sobic006G124200--Sobic004G214300 Sobic006G124200--Sobic001G261400 Sobic006G124200--Sobic005G105600 Sobic006G124200--Sobic006G013300 Sobic006G124200--Sobic010G134900 Sobic003G019400 Sobic003G019400 Sobic006G124200--Sobic003G019400 Sobic006G124200--Sobic010G177300 Sobic003G395200 Sobic003G395200 Sobic006G124200--Sobic003G395200
Octagon: transcription factors


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