Gene annotation
| Transcriptome id | Sobic.003G350400.1 |
|---|---|
| Synonym | Sb03g039330 |
| Functional annotation | thaumatin, putative, expressed |
| UniProt | C5XPM9 |
| Pfam | PF00314 |
| Panther DB | PTHR31048 PTHR31048:SF7 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G28790 : Pathogenesis-related thaumatin superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os01g62260.1 : thaumatin, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026929 |
| Brachypodium | KQK10506 |
| Barley | HORVU3Hr1G086510.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.003G350400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G256900 | acyl-ACP thioesterase, putative, expressed | K10782: fatty acyl-ACP thioesterase A |
| 2 | Sobic.006G016700 | RNA-dependent RNA polymerase, putative, expressed | K11699: RDR, RNA-dependent RNA polymerase |
| 3 | Sobic.007G097100 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
| 4 | Sobic.004G311600 | lysM domain-containing GPI-anchored protein precursor, putative, expressed | - |
| 5 | Sobic.006G041700 | sex determination protein tasselseed-2, putative, expressed | - |
| 6 | Sobic.004G330200 | "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed | - |
| 7 | Sobic.002G175200 | A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed | K10523: speckle-type POZ protein |
| 8 | Sobic.001G246600 | MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 9 | Sobic.004G142400 | ATP-binding region, ATPase-like domain containing protein, expressed | - |
| 10 | Sobic.004G347500 | 2-phosphoglycerate kinase-related, putative, expressed | - |
| 11 | Sobic.006G226000 | expressed protein | - |
| 12 | Sobic.005G126701 | - | - |
| 13 | Sobic.001G493100 | LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 14 | Sobic.001G336200 | "Grain Length3.2(Ortholog in rice:Adamski et al., 2009(PubMedID : 31659842)@cytochrome P450, putative, expressed | - |
| 15 | Sobic.001G276800 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 16 | Sobic.006G172000 | pectinesterase, putative, expressed | - |
| 17 | Sobic.005G138000 | zinc knuckle domain containing protein, expressed | - |
| 18 | Sobic.001G068132 | - | - |
| 19 | Sobic.007G160400 | ZF-HD homeobox protein, putative, expressed | - |
| 20 | Sobic.003G086800 | ZOS1-02 - C2H2 zinc finger protein, expressed | - |
Gene co-expression network
Octagon: transcription factors
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