Gene annotation
Transcriptome id Sobic.004G311600.1
Synonym LYM1, Sb04g034400
Functional annotation lysM domain-containing GPI-anchored protein precursor, putative, expressed
UniProt C5XSX5
Pfam PF01476
Panther DB PTHR23354 PTHR23354:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G21880 : lysm domain GPI-anchored protein 1 precursor
RAP-DB (Rice) LOC_Os02g53000.1 : lysM domain-containing GPI-anchored protein precursor, putative, expressed
MaizeGDB (Corn) Zm00025a022251
Brachypodium KQK01717 , KQK19057 , KQK19058
Barley HORVU6Hr1G080030.9 , HORVU6Hr1G080030.8 , HORVU7Hr1G035300.2 , HORVU7Hr1G035300.3 , HORVU6Hr1G080030.2 , HORVU7Hr1G035300.4 , HORVU7Hr1G035300.5 , HORVU7Hr1G035300.1 , HORVU6Hr1G080030.7 , HORVU6Hr1G080030.6 , HORVU6Hr1G080030.10
Wheat TraesCS6B02G359300 , TraesCS6A02G328800 , TraesCS6B02G359500 , TraesCS7A02G168500 , TraesCS6D02G307700 , TraesCS7D02G169400 , TraesCS7B02G073300
Populus -


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cDNA sequences
Sobic.004G311600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G247800 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.002G286700 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
3 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
4 Sobic.003G350400 thaumatin, putative, expressed -
5 Sobic.003G196000 expressed protein -
6 Sobic.001G276800 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
7 Sobic.002G230900 cyclin, putative, expressed K18810: cyclin D1/2/4, plant
8 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
9 Sobic.004G139900 ATP binding, related, putative, expressed -
10 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
11 Sobic.006G027900 amidase, putative, expressed K01426: E3.5.1.4, amidase
12 Sobic.002G265200 formin, putative, expressed -
13 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
14 Sobic.004G263700 expressed protein -
15 Sobic.003G147500 PHS1, putative, expressed K14165: atypical dual specificity phosphatase
16 Sobic.003G246800 GATA zinc finger domain containing protein, expressed -
17 Sobic.002G259200 POEI18 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
18 Sobic.008G190000 leucine-rich repeat family protein, putative, expressed -
19 Sobic.007G218100 transmembrane receptor, putative, expressed -
20 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -


Gene co-expression network
sample Sobic004G311600 Sobic004G311600 Sobic006G247800 Sobic006G247800 Sobic004G311600--Sobic006G247800 Sobic002G286700 Sobic002G286700 Sobic004G311600--Sobic002G286700 Sobic006G255300 Sobic006G255300 Sobic004G311600--Sobic006G255300 Sobic003G350400 Sobic003G350400 Sobic004G311600--Sobic003G350400 Sobic003G196000 Sobic003G196000 Sobic004G311600--Sobic003G196000 Sobic001G276800 Sobic001G276800 Sobic004G311600--Sobic001G276800 Sobic002G230900 Sobic002G230900 Sobic004G311600--Sobic002G230900 Sobic007G097100 Sobic007G097100 Sobic004G311600--Sobic007G097100 Sobic004G139900 Sobic004G139900 Sobic004G311600--Sobic004G139900 Sobic006G247800--Sobic004G311600 Sobic009G084100 Sobic009G084100 Sobic006G247800--Sobic009G084100 Sobic002G256900 Sobic002G256900 Sobic006G247800--Sobic002G256900 Sobic002G232900 Sobic002G232900 Sobic006G247800--Sobic002G232900 Sobic006G247800--Sobic002G230900 Sobic006G247800--Sobic007G097100 Sobic001G336200 Sobic001G336200 Sobic006G247800--Sobic001G336200 Sobic004G207766 Sobic004G207766 Sobic006G247800--Sobic004G207766 Sobic006G247800--Sobic003G350400 Sobic008G190000 Sobic008G190000 Sobic002G286700--Sobic008G190000 Sobic001G304800 Sobic001G304800 Sobic002G286700--Sobic001G304800 Sobic003G246800 Sobic003G246800 Sobic002G286700--Sobic003G246800 Sobic008G083500 Sobic008G083500 Sobic002G286700--Sobic008G083500 Sobic002G296000 Sobic002G296000 Sobic002G286700--Sobic002G296000 Sobic009G101100 Sobic009G101100 Sobic002G286700--Sobic009G101100 Sobic001G461800 Sobic001G461800 Sobic002G286700--Sobic001G461800 Sobic006G105600 Sobic006G105600 Sobic002G286700--Sobic006G105600 Sobic003G032200 Sobic003G032200 Sobic002G286700--Sobic003G032200 Sobic006G255300--Sobic001G276800 Sobic001G068132 Sobic001G068132 Sobic006G255300--Sobic001G068132 Sobic009G137500 Sobic009G137500 Sobic006G255300--Sobic009G137500 Sobic006G187000 Sobic006G187000 Sobic006G255300--Sobic006G187000 Sobic006G197400 Sobic006G197400 Sobic006G255300--Sobic006G197400 Sobic001G246600 Sobic001G246600 Sobic006G255300--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G255300--Sobic002G175200 Sobic004G330200 Sobic004G330200 Sobic006G255300--Sobic004G330200 Sobic001G267100 Sobic001G267100 Sobic006G255300--Sobic001G267100 Sobic003G350400--Sobic002G256900 Sobic006G016700 Sobic006G016700 Sobic003G350400--Sobic006G016700 Sobic003G350400--Sobic007G097100 Sobic003G350400--Sobic004G311600 Sobic006G041700 Sobic006G041700 Sobic003G350400--Sobic006G041700 Sobic003G350400--Sobic004G330200 Sobic003G350400--Sobic002G175200 Sobic003G350400--Sobic001G246600 Sobic004G142400 Sobic004G142400 Sobic003G350400--Sobic004G142400 Sobic003G196000--Sobic004G311600 Sobic003G196000--Sobic003G350400 Sobic003G196000--Sobic002G230900 Sobic003G196000--Sobic006G247800 Sobic007G218100 Sobic007G218100 Sobic003G196000--Sobic007G218100 Sobic006G027900 Sobic006G027900 Sobic003G196000--Sobic006G027900 Sobic008G135500 Sobic008G135500 Sobic003G196000--Sobic008G135500 Sobic003G196000--Sobic002G286700 Sobic003G196000--Sobic003G246800 Sobic001G276800--Sobic006G255300 Sobic001G276800--Sobic001G246600 Sobic001G276800--Sobic002G175200 Sobic001G276800--Sobic004G330200 Sobic001G276800--Sobic009G137500 Sobic001G276800--Sobic001G068132 Sobic001G276800--Sobic006G187000 Sobic001G276800--Sobic003G350400 Sobic001G276800--Sobic004G311600 Sobic001G261400 Sobic001G261400 Sobic002G230900--Sobic001G261400 Sobic002G218600 Sobic002G218600 Sobic002G230900--Sobic002G218600 Sobic002G230900--Sobic004G311600 Sobic002G230900--Sobic007G218100 Sobic002G230900--Sobic001G304800 Sobic004G263700 Sobic004G263700 Sobic002G230900--Sobic004G263700 Sobic006G013300 Sobic006G013300 Sobic002G230900--Sobic006G013300 Sobic006G073800 Sobic006G073800 Sobic002G230900--Sobic006G073800 Sobic006G124200 Sobic006G124200 Sobic002G230900--Sobic006G124200 Sobic006G172000 Sobic006G172000 Sobic007G097100--Sobic006G172000 Sobic001G320000 Sobic001G320000 Sobic007G097100--Sobic001G320000 Sobic001G493100 Sobic001G493100 Sobic007G097100--Sobic001G493100 Sobic007G097100--Sobic004G142400 Sobic007G160400 Sobic007G160400 Sobic007G097100--Sobic007G160400 Sobic006G226000 Sobic006G226000 Sobic007G097100--Sobic006G226000 Sobic007G097100--Sobic003G350400 Sobic006G135800 Sobic006G135800 Sobic007G097100--Sobic006G135800 Sobic007G097100--Sobic006G041700 Sobic001G448000 Sobic001G448000 Sobic004G139900--Sobic001G448000 Sobic004G139900--Sobic006G255300 Sobic004G139900--Sobic007G097100 Sobic004G139900--Sobic003G350400 Sobic004G139900--Sobic004G311600 Sobic008G042200 Sobic008G042200 Sobic004G139900--Sobic008G042200 Sobic004G139900--Sobic006G016700 Sobic004G139900--Sobic001G276800 Sobic009G200000 Sobic009G200000 Sobic004G139900--Sobic009G200000
Octagon: transcription factors


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