Gene annotation
| Transcriptome id | Sobic.006G027900.1 |
|---|---|
| Synonym | Sb06g002860 |
| Functional annotation | amidase, putative, expressed |
| UniProt | C5YCU5 |
| Pfam | PF01425 |
| Panther DB | PTHR11895 PTHR11895:SF97 |
| NCBI CDD | KOG1211; Amidases |
| KEGG Orthology | K01426; E3.5.1.4, amidase |
| Gene Ontology | GO:0016884; carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
Orthologs (automatic annotation)
| TAIR | AT4G34880 : Amidase family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os04g10410.1 : amidase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048022 , Zm00025a012487 |
| Brachypodium | PNT60503 , PNT60502 |
| Barley | - |
| Wheat | TraesCS2B02G035200 , TraesCS2B02G035800 , TraesCS2B02G037100 , TraesCS3D02G364700 , TraesCS2D02G026900 , TraesCS2D02G027200 , TraesCS2A02G025200 , TraesCSU02G008400 , TraesCS2D02G026300 , TraesCS3D02G364700 , TraesCS2B02G037500 , TraesCSU02G233300 , TraesCS2B02G037400 , TraesCS2A02G025000 , TraesCS2B02G035900 , TraesCS2A02G064000 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G311600 | lysM domain-containing GPI-anchored protein precursor, putative, expressed | - |
| 2 | Sobic.003G350400 | thaumatin, putative, expressed | - |
| 3 | Sobic.007G097100 | aspartic proteinase nepenthesin precursor, putative, expressed | - |
| 4 | Sobic.001G112500 | ZF-HD protein dimerisation region containing protein, expressed | - |
| 5 | Sobic.001G276800 | peptide transporter PTR2, putative, expressed | K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4 |
| 6 | Sobic.006G255300 | "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed | K14486: K14486, auxin response factor |
| 7 | Sobic.004G330200 | "TGW6(Ortholog in rice:Ishimaru et al., 2013)"(PubMedID : 31659893)@SMP-30/Gluconolaconase/LRE-like region containing protein, expressed | - |
| 8 | Sobic.002G175200 | A3-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with A3 subfamily conserved sequence, expressed | K10523: speckle-type POZ protein |
| 9 | Sobic.001G246600 | MBTB37 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 10 | Sobic.004G139900 | ATP binding, related, putative, expressed | - |
| 11 | Sobic.003G196000 | expressed protein | - |
| 12 | Sobic.001G336200 | "Grain Length3.2(Ortholog in rice:Adamski et al., 2009(PubMedID : 31659842)@cytochrome P450, putative, expressed | - |
| 13 | Sobic.002G230900 | cyclin, putative, expressed | K18810: cyclin D1/2/4, plant |
| 14 | Sobic.002G265200 | formin, putative, expressed | - |
| 15 | Sobic.004G142400 | ATP-binding region, ATPase-like domain containing protein, expressed | - |
| 16 | Sobic.006G247800 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 17 | Sobic.007G160400 | ZF-HD homeobox protein, putative, expressed | - |
| 18 | Sobic.001G068132 | - | - |
| 19 | Sobic.005G126701 | - | - |
| 20 | Sobic.002G256900 | acyl-ACP thioesterase, putative, expressed | K10782: fatty acyl-ACP thioesterase A |
Gene co-expression network
Octagon: transcription factors
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