Gene annotation
Transcriptome id Sobic.002G265200.1
Synonym ATFH1, FH1, AHF1, Sb02g030000, AFH1
Functional annotation formin, putative, expressed
UniProt C5X5G1
Pfam PF02181
Panther DB PTHR23213 PTHR23213:SF246
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25500 : formin homology 1
RAP-DB (Rice) LOC_Os09g34180.1 : formin, putative, expressed
MaizeGDB (Corn) Zm00025a014359 , Zm00025a047673 , Zm00025a048585 , Zm00025a001632
Brachypodium -
Barley HORVU5Hr1G079700.8 , HORVU5Hr1G079700.9 , HORVU5Hr1G079700.4 , HORVU5Hr1G079700.5 , HORVU5Hr1G079700.6 , HORVU5Hr1G079700.7 , HORVU5Hr1G079700.1 , HORVU5Hr1G079700.3 , HORVU5Hr1G079700.10
Wheat TraesCS5B02G305100 , TraesCS5D02G311600
Populus -


JBrowse

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cDNA sequences
Sobic.002G265200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G097100 aspartic proteinase nepenthesin precursor, putative, expressed -
2 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
3 Sobic.006G197400 helix-loop-helix DNA-binding protein, putative, expressed -
4 Sobic.003G350400 thaumatin, putative, expressed -
5 Sobic.001G112500 ZF-HD protein dimerisation region containing protein, expressed -
6 Sobic.006G255300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor, putative, expressed K14486: K14486, auxin response factor
7 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
8 Sobic.001G068132 - -
9 Sobic.003G086800 ZOS1-02 - C2H2 zinc finger protein, expressed -
10 Sobic.006G041700 sex determination protein tasselseed-2, putative, expressed -
11 Sobic.006G172000 pectinesterase, putative, expressed -
12 Sobic.001G493100 LTPL82 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
13 Sobic.001G320000 OsSub61 - Putative Subtilisin homologue, expressed -
14 Sobic.007G160400 ZF-HD homeobox protein, putative, expressed -
15 Sobic.004G311600 lysM domain-containing GPI-anchored protein precursor, putative, expressed -
16 Sobic.006G226000 expressed protein -
17 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
18 Sobic.010G037901 - -
19 Sobic.006G135800 peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.001G104500 growth-regulating factor, putative, expressed -


Gene co-expression network
sample Sobic002G265200 Sobic002G265200 Sobic007G097100 Sobic007G097100 Sobic002G265200--Sobic007G097100 Sobic006G016700 Sobic006G016700 Sobic002G265200--Sobic006G016700 Sobic006G197400 Sobic006G197400 Sobic002G265200--Sobic006G197400 Sobic003G350400 Sobic003G350400 Sobic002G265200--Sobic003G350400 Sobic001G112500 Sobic001G112500 Sobic002G265200--Sobic001G112500 Sobic006G255300 Sobic006G255300 Sobic002G265200--Sobic006G255300 Sobic002G256900 Sobic002G256900 Sobic002G265200--Sobic002G256900 Sobic001G068132 Sobic001G068132 Sobic002G265200--Sobic001G068132 Sobic003G086800 Sobic003G086800 Sobic002G265200--Sobic003G086800 Sobic006G172000 Sobic006G172000 Sobic007G097100--Sobic006G172000 Sobic001G320000 Sobic001G320000 Sobic007G097100--Sobic001G320000 Sobic001G493100 Sobic001G493100 Sobic007G097100--Sobic001G493100 Sobic004G142400 Sobic004G142400 Sobic007G097100--Sobic004G142400 Sobic007G160400 Sobic007G160400 Sobic007G097100--Sobic007G160400 Sobic006G226000 Sobic006G226000 Sobic007G097100--Sobic006G226000 Sobic007G097100--Sobic003G350400 Sobic006G135800 Sobic006G135800 Sobic007G097100--Sobic006G135800 Sobic006G041700 Sobic006G041700 Sobic007G097100--Sobic006G041700 Sobic003G147500 Sobic003G147500 Sobic006G016700--Sobic003G147500 Sobic006G275500 Sobic006G275500 Sobic006G016700--Sobic006G275500 Sobic006G016700--Sobic002G256900 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic002G168000 Sobic002G168000 Sobic006G016700--Sobic002G168000 Sobic007G187700 Sobic007G187700 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic005G153000 Sobic005G153000 Sobic006G016700--Sobic005G153000 Sobic006G197400--Sobic001G493100 Sobic001G199200 Sobic001G199200 Sobic006G197400--Sobic001G199200 Sobic006G197400--Sobic006G041700 Sobic006G197400--Sobic006G255300 Sobic006G197400--Sobic003G086800 Sobic006G197400--Sobic006G016700 Sobic006G197400--Sobic006G172000 Sobic001G246600 Sobic001G246600 Sobic006G197400--Sobic001G246600 Sobic002G175200 Sobic002G175200 Sobic006G197400--Sobic002G175200 Sobic003G350400--Sobic002G256900 Sobic003G350400--Sobic006G016700 Sobic003G350400--Sobic007G097100 Sobic004G311600 Sobic004G311600 Sobic003G350400--Sobic004G311600 Sobic003G350400--Sobic006G041700 Sobic004G330200 Sobic004G330200 Sobic003G350400--Sobic004G330200 Sobic003G350400--Sobic002G175200 Sobic003G350400--Sobic001G246600 Sobic003G350400--Sobic004G142400 Sobic002G232900 Sobic002G232900 Sobic001G112500--Sobic002G232900 Sobic004G347500 Sobic004G347500 Sobic001G112500--Sobic004G347500 Sobic001G112500--Sobic002G256900 Sobic001G336200 Sobic001G336200 Sobic001G112500--Sobic001G336200 Sobic006G013300 Sobic006G013300 Sobic001G112500--Sobic006G013300 Sobic007G153600 Sobic007G153600 Sobic001G112500--Sobic007G153600 Sobic001G112500--Sobic002G265200 Sobic009G208600 Sobic009G208600 Sobic001G112500--Sobic009G208600 Sobic001G112500--Sobic003G350400 Sobic001G276800 Sobic001G276800 Sobic006G255300--Sobic001G276800 Sobic006G255300--Sobic001G068132 Sobic009G137500 Sobic009G137500 Sobic006G255300--Sobic009G137500 Sobic006G187000 Sobic006G187000 Sobic006G255300--Sobic006G187000 Sobic006G255300--Sobic006G197400 Sobic006G255300--Sobic001G246600 Sobic006G255300--Sobic002G175200 Sobic006G255300--Sobic004G330200 Sobic001G267100 Sobic001G267100 Sobic006G255300--Sobic001G267100 Sobic002G256900--Sobic006G226000 Sobic002G256900--Sobic003G086800 Sobic004G123200 Sobic004G123200 Sobic002G256900--Sobic004G123200 Sobic002G256900--Sobic004G347500 Sobic002G256900--Sobic007G160400 Sobic009G012500 Sobic009G012500 Sobic002G256900--Sobic009G012500 Sobic002G240000 Sobic002G240000 Sobic002G256900--Sobic002G240000 Sobic001G203350 Sobic001G203350 Sobic002G256900--Sobic001G203350 Sobic005G021000 Sobic005G021000 Sobic002G256900--Sobic005G021000 Sobic001G068132--Sobic006G255300 Sobic001G068132--Sobic004G330200 Sobic001G068132--Sobic002G175200 Sobic001G068132--Sobic001G246600 Sobic001G068132--Sobic001G276800 Sobic001G068132--Sobic003G086800 Sobic001G068132--Sobic006G016700 Sobic001G068132--Sobic003G350400 Sobic001G068132--Sobic001G493100 Sobic010G037901 Sobic010G037901 Sobic003G086800--Sobic010G037901 Sobic003G086800--Sobic007G160400 Sobic003G086800--Sobic006G226000 Sobic003G086800--Sobic002G256900 Sobic003G086800--Sobic004G142400 Sobic009G014800 Sobic009G014800 Sobic003G086800--Sobic009G014800 Sobic003G086800--Sobic004G123200 Sobic006G083900 Sobic006G083900 Sobic003G086800--Sobic006G083900 Sobic003G086800--Sobic001G203350
Octagon: transcription factors


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