Gene annotation
Transcriptome id Sobic.001G104500.1
Synonym GRF1, Sb01g009330, AtGRF1
Functional annotation growth-regulating factor, putative, expressed
UniProt C5WLZ4
Pfam PF08880 PF08879
Panther DB PTHR31602 PTHR31602:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0005524ATP binding GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT2G22840 : growth-regulating factor 1
RAP-DB (Rice) LOC_Os03g51970.1 : growth-regulating factor, putative, expressed
MaizeGDB (Corn) Zm00025a008001 , Zm00025a015738 , Zm00025a016883
Brachypodium KQK13399 , KQK13398
Barley HORVU4Hr1G010080.7 , HORVU4Hr1G010080.6 , HORVU4Hr1G010080.5 , HORVU4Hr1G010080.4 , HORVU4Hr1G010080.3 , HORVU4Hr1G010080.2 , HORVU4Hr1G010080.9 , HORVU4Hr1G010080.8 , HORVU4Hr1G010080.12 , HORVU4Hr1G010080.11 , HORVU4Hr1G010080.10
Wheat TraesCS7B02G070200 , TraesCS4D02G059600 , TraesCS4A02G255000 , TraesCS4B02G060000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G282601 - -
2 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
3 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
4 Sobic.004G317000 growth regulating factor protein, putative, expressed -
5 Sobic.002G256900 acyl-ACP thioesterase, putative, expressed K10782: fatty acyl-ACP thioesterase A
6 Sobic.002G168000 expressed protein -
7 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP
8 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
9 Sobic.010G037901 - -
10 Sobic.006G226000 expressed protein -
11 Sobic.005G153000 agenet domain containing protein, expressed -
12 Sobic.004G052200 expressed protein -
13 Sobic.009G077300 protein kinase, putative, expressed -
14 Sobic.003G084200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.004G207766 - -
16 Sobic.005G196600 expressed protein -
17 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
18 Sobic.006G196600 expressed protein -
19 Sobic.007G218100 transmembrane receptor, putative, expressed -
20 Sobic.006G221300 expressed protein -


Gene co-expression network
sample Sobic001G104500 Sobic001G104500 Sobic004G282601 Sobic004G282601 Sobic001G104500--Sobic004G282601 Sobic006G275500 Sobic006G275500 Sobic001G104500--Sobic006G275500 Sobic007G187700 Sobic007G187700 Sobic001G104500--Sobic007G187700 Sobic004G317000 Sobic004G317000 Sobic001G104500--Sobic004G317000 Sobic002G256900 Sobic002G256900 Sobic001G104500--Sobic002G256900 Sobic002G168000 Sobic002G168000 Sobic001G104500--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic001G104500--Sobic002G055800 Sobic006G016700 Sobic006G016700 Sobic001G104500--Sobic006G016700 Sobic010G037901 Sobic010G037901 Sobic001G104500--Sobic010G037901 Sobic005G153000 Sobic005G153000 Sobic004G282601--Sobic005G153000 Sobic004G282601--Sobic001G104500 Sobic004G282601--Sobic010G037901 Sobic009G077300 Sobic009G077300 Sobic004G282601--Sobic009G077300 Sobic009G002200 Sobic009G002200 Sobic004G282601--Sobic009G002200 Sobic004G282601--Sobic007G187700 Sobic003G290400 Sobic003G290400 Sobic004G282601--Sobic003G290400 Sobic006G221300 Sobic006G221300 Sobic004G282601--Sobic006G221300 Sobic005G196600 Sobic005G196600 Sobic004G282601--Sobic005G196600 Sobic006G275500--Sobic006G016700 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250 Sobic007G187700--Sobic002G168000 Sobic002G021200 Sobic002G021200 Sobic007G187700--Sobic002G021200 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic001G377700 Sobic001G377700 Sobic007G187700--Sobic001G377700 Sobic007G187700--Sobic006G275500 Sobic007G187700--Sobic004G317000 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic009G143200 Sobic009G143200 Sobic004G317000--Sobic009G143200 Sobic004G317000--Sobic007G187700 Sobic004G317000--Sobic001G104500 Sobic006G196600 Sobic006G196600 Sobic004G317000--Sobic006G196600 Sobic003G282500 Sobic003G282500 Sobic004G317000--Sobic003G282500 Sobic001G238900 Sobic001G238900 Sobic004G317000--Sobic001G238900 Sobic001G054700 Sobic001G054700 Sobic004G317000--Sobic001G054700 Sobic002G223900 Sobic002G223900 Sobic004G317000--Sobic002G223900 Sobic004G317000--Sobic004G282601 Sobic006G226000 Sobic006G226000 Sobic002G256900--Sobic006G226000 Sobic003G086800 Sobic003G086800 Sobic002G256900--Sobic003G086800 Sobic004G123200 Sobic004G123200 Sobic002G256900--Sobic004G123200 Sobic004G347500 Sobic004G347500 Sobic002G256900--Sobic004G347500 Sobic007G160400 Sobic007G160400 Sobic002G256900--Sobic007G160400 Sobic009G012500 Sobic009G012500 Sobic002G256900--Sobic009G012500 Sobic002G240000 Sobic002G240000 Sobic002G256900--Sobic002G240000 Sobic001G203350 Sobic001G203350 Sobic002G256900--Sobic001G203350 Sobic005G021000 Sobic005G021000 Sobic002G256900--Sobic005G021000 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic002G055800--Sobic004G123200 Sobic002G055800--Sobic006G226000 Sobic001G136400 Sobic001G136400 Sobic002G055800--Sobic001G136400 Sobic001G366300 Sobic001G366300 Sobic002G055800--Sobic001G366300 Sobic003G001800 Sobic003G001800 Sobic002G055800--Sobic003G001800 Sobic002G055800--Sobic009G012500 Sobic006G083900 Sobic006G083900 Sobic002G055800--Sobic006G083900 Sobic002G055800--Sobic002G240000 Sobic004G142400 Sobic004G142400 Sobic002G055800--Sobic004G142400 Sobic006G016700--Sobic003G147500 Sobic006G016700--Sobic006G275500 Sobic006G016700--Sobic002G256900 Sobic006G016700--Sobic006G226000 Sobic007G050800 Sobic007G050800 Sobic006G016700--Sobic007G050800 Sobic006G016700--Sobic002G168000 Sobic006G016700--Sobic007G187700 Sobic008G052300 Sobic008G052300 Sobic006G016700--Sobic008G052300 Sobic006G016700--Sobic005G153000 Sobic010G037901--Sobic005G196600 Sobic010G037901--Sobic006G226000 Sobic010G037901--Sobic003G086800 Sobic009G031800 Sobic009G031800 Sobic010G037901--Sobic009G031800 Sobic009G188600 Sobic009G188600 Sobic010G037901--Sobic009G188600 Sobic010G037901--Sobic005G153000 Sobic006G135800 Sobic006G135800 Sobic010G037901--Sobic006G135800 Sobic010G037901--Sobic007G160400 Sobic010G037901--Sobic004G282601
Octagon: transcription factors


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