Gene annotation
Transcriptome id Sobic.004G317000.1,Sobic.004G317000.2
Synonym GRF5, AtGRF5, Sb04g034800
Functional annotation growth regulating factor protein, putative, expressed
UniProt A0A194YSJ1 , C5XTK5
Pfam PF08880 PF08879
Panther DB PTHR31602 PTHR31602:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus GO:0005524ATP binding GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G13960 : growth-regulating factor 5
RAP-DB (Rice) LOC_Os02g53690.1 : growth regulating factor protein, putative, expressed
MaizeGDB (Corn) Zm00025a058032 , Zm00025a049628 , Zm00025a022322 , Zm00025a042463 , Zm00025a033037
Brachypodium KQK01641 , PNT76252 , PNT76253
Barley HORVU2Hr1G101770.18 , HORVU2Hr1G101770.14 , HORVU2Hr1G101770.15 , HORVU2Hr1G101770.16 , HORVU2Hr1G101770.17 , HORVU2Hr1G101770.10 , HORVU2Hr1G101770.11 , HORVU2Hr1G101770.13 , HORVU2Hr1G101770.6 , HORVU2Hr1G101770.7 , HORVU2Hr1G101770.4 , HORVU2Hr1G101770.3 , HORVU2Hr1G101770.8 , HORVU2Hr1G101770.9 , HORVU6Hr1G081210.2 , HORVU6Hr1G081210.3 , HORVU6Hr1G081210.1 , HORVU7Hr1G034610.5 , HORVU7Hr1G034610.4 , HORVU7Hr1G034610.3 , HORVU7Hr1G034610.2 , HORVU7Hr1G034610.1
Wheat TraesCS2A02G435100 , TraesCS7A02G165600 , TraesCS6B02G366700 , TraesCS6D02G315700 , TraesCS7B02G070200 , TraesCS6A02G335900 , TraesCS2B02G458400 , TraesCS2D02G435200 , TraesCS7D02G166400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
2 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
3 Sobic.001G104500 growth-regulating factor, putative, expressed -
4 Sobic.006G196600 expressed protein -
5 Sobic.003G282500 keratin, type I cytoskeletal 9, putative, expressed -
6 Sobic.001G238900 OsFBX386 - F-box domain containing protein, expressed -
7 Sobic.001G054700 seed specific protein Bn15D14A, putative, expressed -
8 Sobic.002G223900 OsFBX330 - F-box domain containing protein, expressed -
9 Sobic.004G282601 - -
10 Sobic.005G157300 protein binding protein, putative, expressed -
11 Sobic.007G121600 - -
12 Sobic.002G230800 expressed protein -
13 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
14 Sobic.003G055600 expressed protein -
15 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
16 Sobic.009G077300 protein kinase, putative, expressed -
17 Sobic.002G168000 expressed protein -
18 Sobic.007G121650 - -
19 Sobic.007G162400 ABC-2 type transporter domain containing protein, expressed -
20 Sobic.001G105800 OsFBX109 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic004G317000 Sobic004G317000 Sobic009G143200 Sobic009G143200 Sobic004G317000--Sobic009G143200 Sobic007G187700 Sobic007G187700 Sobic004G317000--Sobic007G187700 Sobic001G104500 Sobic001G104500 Sobic004G317000--Sobic001G104500 Sobic006G196600 Sobic006G196600 Sobic004G317000--Sobic006G196600 Sobic003G282500 Sobic003G282500 Sobic004G317000--Sobic003G282500 Sobic001G238900 Sobic001G238900 Sobic004G317000--Sobic001G238900 Sobic001G054700 Sobic001G054700 Sobic004G317000--Sobic001G054700 Sobic002G223900 Sobic002G223900 Sobic004G317000--Sobic002G223900 Sobic004G282601 Sobic004G282601 Sobic004G317000--Sobic004G282601 Sobic005G157300 Sobic005G157300 Sobic009G143200--Sobic005G157300 Sobic009G143200--Sobic004G317000 Sobic009G143200--Sobic001G054700 Sobic003G055600 Sobic003G055600 Sobic009G143200--Sobic003G055600 Sobic006G221300 Sobic006G221300 Sobic009G143200--Sobic006G221300 Sobic009G077300 Sobic009G077300 Sobic009G143200--Sobic009G077300 Sobic004G108400 Sobic004G108400 Sobic009G143200--Sobic004G108400 Sobic004G052200 Sobic004G052200 Sobic009G143200--Sobic004G052200 Sobic009G143200--Sobic007G187700 Sobic002G168000 Sobic002G168000 Sobic007G187700--Sobic002G168000 Sobic002G021200 Sobic002G021200 Sobic007G187700--Sobic002G021200 Sobic005G153000 Sobic005G153000 Sobic007G187700--Sobic005G153000 Sobic007G187700--Sobic001G104500 Sobic001G377700 Sobic001G377700 Sobic007G187700--Sobic001G377700 Sobic006G275500 Sobic006G275500 Sobic007G187700--Sobic006G275500 Sobic007G187700--Sobic004G317000 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic001G104500--Sobic004G282601 Sobic001G104500--Sobic006G275500 Sobic001G104500--Sobic007G187700 Sobic001G104500--Sobic004G317000 Sobic002G256900 Sobic002G256900 Sobic001G104500--Sobic002G256900 Sobic001G104500--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic001G104500--Sobic002G055800 Sobic006G016700 Sobic006G016700 Sobic001G104500--Sobic006G016700 Sobic010G037901 Sobic010G037901 Sobic001G104500--Sobic010G037901 Sobic006G051000 Sobic006G051000 Sobic006G196600--Sobic006G051000 Sobic003G183700 Sobic003G183700 Sobic006G196600--Sobic003G183700 Sobic006G195500 Sobic006G195500 Sobic006G196600--Sobic006G195500 Sobic006G196600--Sobic004G317000 Sobic006G196600--Sobic001G377700 Sobic006G196600--Sobic007G187700 Sobic006G196600--Sobic006G275500 Sobic006G196600--Sobic005G157300 Sobic010G103700 Sobic010G103700 Sobic006G196600--Sobic010G103700 Sobic009G057800 Sobic009G057800 Sobic003G282500--Sobic009G057800 Sobic003G282500--Sobic004G317000 Sobic007G201900 Sobic007G201900 Sobic003G282500--Sobic007G201900 Sobic003G129200 Sobic003G129200 Sobic003G282500--Sobic003G129200 Sobic005G196600 Sobic005G196600 Sobic003G282500--Sobic005G196600 Sobic010G255000 Sobic010G255000 Sobic003G282500--Sobic010G255000 Sobic003G282500--Sobic004G282601 Sobic003G250100 Sobic003G250100 Sobic003G282500--Sobic003G250100 Sobic003G282500--Sobic009G143200 Sobic003G244000 Sobic003G244000 Sobic001G238900--Sobic003G244000 Sobic002G230800 Sobic002G230800 Sobic001G238900--Sobic002G230800 Sobic001G105800 Sobic001G105800 Sobic001G238900--Sobic001G105800 Sobic002G246900 Sobic002G246900 Sobic001G238900--Sobic002G246900 Sobic001G238900--Sobic002G223900 Sobic009G109300 Sobic009G109300 Sobic001G238900--Sobic009G109300 Sobic001G238900--Sobic004G317000 Sobic001G118800 Sobic001G118800 Sobic001G238900--Sobic001G118800 Sobic001G169800 Sobic001G169800 Sobic001G238900--Sobic001G169800 Sobic001G054700--Sobic006G221300 Sobic001G054700--Sobic009G077300 Sobic001G054700--Sobic004G108400 Sobic001G054700--Sobic009G143200 Sobic002G050700 Sobic002G050700 Sobic001G054700--Sobic002G050700 Sobic006G124400 Sobic006G124400 Sobic001G054700--Sobic006G124400 Sobic009G127800 Sobic009G127800 Sobic001G054700--Sobic009G127800 Sobic001G054700--Sobic005G153000 Sobic006G221800 Sobic006G221800 Sobic001G054700--Sobic006G221800 Sobic001G456500 Sobic001G456500 Sobic002G223900--Sobic001G456500 Sobic001G083300 Sobic001G083300 Sobic002G223900--Sobic001G083300 Sobic002G223900--Sobic001G105800 Sobic004G331600 Sobic004G331600 Sobic002G223900--Sobic004G331600 Sobic007G007800 Sobic007G007800 Sobic002G223900--Sobic007G007800 Sobic008G129200 Sobic008G129200 Sobic002G223900--Sobic008G129200 Sobic006G116500 Sobic006G116500 Sobic002G223900--Sobic006G116500 Sobic002G223900--Sobic003G183700 Sobic003G387700 Sobic003G387700 Sobic002G223900--Sobic003G387700 Sobic004G282601--Sobic005G153000 Sobic004G282601--Sobic001G104500 Sobic004G282601--Sobic010G037901 Sobic004G282601--Sobic009G077300 Sobic009G002200 Sobic009G002200 Sobic004G282601--Sobic009G002200 Sobic004G282601--Sobic007G187700 Sobic003G290400 Sobic003G290400 Sobic004G282601--Sobic003G290400 Sobic004G282601--Sobic006G221300 Sobic004G282601--Sobic005G196600
Octagon: transcription factors


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