Gene annotation
Transcriptome id Sobic.007G187700.1
Synonym RB, RBR1, RBR, RB1, ATRBR1, Sb07g025760
Functional annotation retinoblastoma-related protein-like, putative, expressed
UniProt C5YHM0
Pfam PF08934 PF11934 PF01857 PF01858
Panther DB PTHR13742 PTHR13742:SF17
NCBI CDD -
KEGG Orthology K04681; retinoblastoma-like protein 1
Gene Ontology GO:0005634; nucleus GO:0006357regulation of transcription by RNA polymerase II GO:0007049cell cycle GO:0006351transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT3G12280 : retinoblastoma-related 1
RAP-DB (Rice) LOC_Os08g42600.1 : retinoblastoma-related protein-like, putative, expressed
MaizeGDB (Corn) Zm00025a005325 , Zm00025a033601
Brachypodium KQJ99190 , KQJ99189 , KQJ99188 , KQJ99187
Barley HORVU7Hr1G055440.7 , HORVU7Hr1G055440.6 , HORVU7Hr1G055440.5 , HORVU7Hr1G055440.4 , HORVU7Hr1G055440.3 , HORVU7Hr1G055440.2 , HORVU7Hr1G055440.1 , HORVU7Hr1G055440.9 , HORVU7Hr1G055440.8 , HORVU7Hr1G055440.19 , HORVU7Hr1G055440.18 , HORVU7Hr1G055440.17 , HORVU7Hr1G055440.16 , HORVU7Hr1G055440.15 , HORVU7Hr1G055440.13 , HORVU7Hr1G055440.12 , HORVU7Hr1G055440.11 , HORVU7Hr1G055440.10 , HORVU7Hr1G055440.24 , HORVU7Hr1G055440.31 , HORVU7Hr1G055440.30 , HORVU7Hr1G055440.26 , HORVU7Hr1G055440.27 , HORVU7Hr1G055440.25 , HORVU7Hr1G055440.22 , HORVU7Hr1G055440.23 , HORVU7Hr1G055440.20 , HORVU7Hr1G055440.21 , HORVU7Hr1G055440.28 , HORVU7Hr1G055440.29
Wheat TraesCS7D02G265600 , TraesCS7D02G265600 , TraesCS7D02G265600 , TraesCS7D02G265600 , TraesCS7B02G162700 , TraesCS7B02G162700 , TraesCS7B02G162700 , TraesCS7B02G162700 , TraesCS7B02G162700 , TraesCS7A02G264800 , TraesCS7A02G264800 , TraesCS7A02G264800 , TraesCS7A02G264800 , TraesCS7A02G264800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G168000 expressed protein -
2 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
3 Sobic.005G153000 agenet domain containing protein, expressed -
4 Sobic.001G104500 growth-regulating factor, putative, expressed -
5 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
6 Sobic.006G275500 regulator of chromosome condensation, putative, expressed -
7 Sobic.004G317000 growth regulating factor protein, putative, expressed -
8 Sobic.004G282601 - -
9 Sobic.009G077300 protein kinase, putative, expressed -
10 Sobic.009G143200 DUF630/DUF632 domains containing protein, putative, expressed -
11 Sobic.005G157300 protein binding protein, putative, expressed -
12 Sobic.006G196600 expressed protein -
13 Sobic.006G016700 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
14 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.009G146250 - -
16 Sobic.007G050800 abhydrolase domain-containing protein FAM108C1, putative, expressed -
17 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
18 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
19 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
20 Sobic.002G055800 zinc finger, C3HC4 type domain containing protein, expressed K16277: E3 ubiquitin-protein ligase DRIP


Gene co-expression network
sample Sobic007G187700 Sobic007G187700 Sobic002G168000 Sobic002G168000 Sobic007G187700--Sobic002G168000 Sobic002G021200 Sobic002G021200 Sobic007G187700--Sobic002G021200 Sobic005G153000 Sobic005G153000 Sobic007G187700--Sobic005G153000 Sobic001G104500 Sobic001G104500 Sobic007G187700--Sobic001G104500 Sobic001G377700 Sobic001G377700 Sobic007G187700--Sobic001G377700 Sobic006G275500 Sobic006G275500 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic009G077300 Sobic009G077300 Sobic007G187700--Sobic009G077300 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic002G021200--Sobic007G187700 Sobic002G021200--Sobic001G377700 Sobic002G021200--Sobic002G168000 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic002G021200--Sobic009G077300 Sobic005G153000--Sobic009G077300 Sobic005G153000--Sobic002G168000 Sobic005G153000--Sobic004G282601 Sobic010G037901 Sobic010G037901 Sobic005G153000--Sobic010G037901 Sobic003G290400 Sobic003G290400 Sobic005G153000--Sobic003G290400 Sobic005G153000--Sobic007G187700 Sobic006G221300 Sobic006G221300 Sobic005G153000--Sobic006G221300 Sobic003G129500 Sobic003G129500 Sobic005G153000--Sobic003G129500 Sobic005G196600 Sobic005G196600 Sobic005G153000--Sobic005G196600 Sobic001G104500--Sobic004G282601 Sobic001G104500--Sobic006G275500 Sobic001G104500--Sobic007G187700 Sobic001G104500--Sobic004G317000 Sobic002G256900 Sobic002G256900 Sobic001G104500--Sobic002G256900 Sobic001G104500--Sobic002G168000 Sobic002G055800 Sobic002G055800 Sobic001G104500--Sobic002G055800 Sobic001G104500--Sobic006G016700 Sobic001G104500--Sobic010G037901 Sobic002G290000 Sobic002G290000 Sobic001G377700--Sobic002G290000 Sobic001G377700--Sobic002G021200 Sobic003G183700 Sobic003G183700 Sobic001G377700--Sobic003G183700 Sobic005G110535 Sobic005G110535 Sobic001G377700--Sobic005G110535 Sobic001G377700--Sobic003G055600 Sobic006G195500 Sobic006G195500 Sobic001G377700--Sobic006G195500 Sobic001G377700--Sobic007G187700 Sobic007G125300 Sobic007G125300 Sobic001G377700--Sobic007G125300 Sobic001G377700--Sobic005G157300 Sobic006G275500--Sobic006G016700 Sobic006G275500--Sobic001G104500 Sobic006G275500--Sobic002G168000 Sobic003G147500 Sobic003G147500 Sobic006G275500--Sobic003G147500 Sobic006G275500--Sobic007G187700 Sobic008G090000 Sobic008G090000 Sobic006G275500--Sobic008G090000 Sobic006G275500--Sobic009G077300 Sobic006G094100 Sobic006G094100 Sobic006G275500--Sobic006G094100 Sobic009G146250 Sobic009G146250 Sobic006G275500--Sobic009G146250 Sobic009G143200 Sobic009G143200 Sobic004G317000--Sobic009G143200 Sobic004G317000--Sobic007G187700 Sobic004G317000--Sobic001G104500 Sobic006G196600 Sobic006G196600 Sobic004G317000--Sobic006G196600 Sobic003G282500 Sobic003G282500 Sobic004G317000--Sobic003G282500 Sobic001G238900 Sobic001G238900 Sobic004G317000--Sobic001G238900 Sobic004G317000--Sobic001G054700 Sobic002G223900 Sobic002G223900 Sobic004G317000--Sobic002G223900 Sobic004G317000--Sobic004G282601 Sobic004G282601--Sobic005G153000 Sobic004G282601--Sobic001G104500 Sobic004G282601--Sobic010G037901 Sobic004G282601--Sobic009G077300 Sobic009G002200 Sobic009G002200 Sobic004G282601--Sobic009G002200 Sobic004G282601--Sobic007G187700 Sobic004G282601--Sobic003G290400 Sobic004G282601--Sobic006G221300 Sobic004G282601--Sobic005G196600 Sobic009G077300--Sobic005G153000 Sobic009G077300--Sobic006G221300 Sobic009G077300--Sobic001G054700 Sobic005G163400 Sobic005G163400 Sobic009G077300--Sobic005G163400 Sobic009G077300--Sobic002G168000 Sobic002G050700 Sobic002G050700 Sobic009G077300--Sobic002G050700 Sobic009G077300--Sobic004G282601 Sobic009G077300--Sobic009G143200 Sobic009G077300--Sobic007G187700
Octagon: transcription factors


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