Gene annotation
Transcriptome id Sobic.002G095300.1
Synonym Sb02g007860
Functional annotation deoxynucleoside kinase family, putative, expressed
UniProt A0A1W0W353
Pfam PF01712
Panther DB PTHR10513 PTHR10513:SF24
NCBI CDD KOG4235; Mitochondrial thymidine kinase 2/deoxyguanosine kinase
KEGG Orthology K00893; deoxycitidine kinase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72040 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g35520.1 : deoxynucleoside kinase family, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus PNT07798


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G187600 expressed protein -
2 Sobic.010G087100 MCM9 - Putative minichromosome maintenance MCM family subunit 9, expressed K10738: DNA helicase MCM9
3 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
4 Sobic.002G123600 expressed protein -
5 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
6 Sobic.008G118100 kelch repeat protein, putative, expressed -
7 Sobic.008G090400 - -
8 Sobic.002G168000 expressed protein -
9 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4
10 Sobic.003G183466 - -
11 Sobic.003G326500 apurinic endonuclease-redox protein, putative, expressed K01142: E3.1.11.2, exodeoxyribonuclease III
12 Sobic.006G127200 kelch repeat protein, putative, expressed -
13 Sobic.003G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptidase, putative, expressed K01392: thimet oligopeptidase
14 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
15 Sobic.002G367200 RNA-binding protein-like, putative, expressed -
16 Sobic.001G199500 heat shock protein DnaJ, putative, expressed K09531: DnaJ homolog subfamily C member 11
17 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
18 Sobic.001G486600 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
19 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
20 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C


Gene co-expression network
sample Sobic002G095300 Sobic002G095300 Sobic002G187600 Sobic002G187600 Sobic002G095300--Sobic002G187600 Sobic010G087100 Sobic010G087100 Sobic002G095300--Sobic010G087100 Sobic002G021200 Sobic002G021200 Sobic002G095300--Sobic002G021200 Sobic002G123600 Sobic002G123600 Sobic002G095300--Sobic002G123600 Sobic007G187700 Sobic007G187700 Sobic002G095300--Sobic007G187700 Sobic008G118100 Sobic008G118100 Sobic002G095300--Sobic008G118100 Sobic008G090400 Sobic008G090400 Sobic002G095300--Sobic008G090400 Sobic002G168000 Sobic002G168000 Sobic002G095300--Sobic002G168000 Sobic006G126800 Sobic006G126800 Sobic002G095300--Sobic006G126800 Sobic002G187600--Sobic002G095300 Sobic002G187600--Sobic008G118100 Sobic007G050800 Sobic007G050800 Sobic002G187600--Sobic007G050800 Sobic003G102700 Sobic003G102700 Sobic002G187600--Sobic003G102700 Sobic004G286200 Sobic004G286200 Sobic002G187600--Sobic004G286200 Sobic002G187600--Sobic008G090400 Sobic002G187600--Sobic007G187700 Sobic001G199500 Sobic001G199500 Sobic002G187600--Sobic001G199500 Sobic003G290400 Sobic003G290400 Sobic002G187600--Sobic003G290400 Sobic010G087100--Sobic002G095300 Sobic003G379900 Sobic003G379900 Sobic010G087100--Sobic003G379900 Sobic001G506300 Sobic001G506300 Sobic010G087100--Sobic001G506300 Sobic002G131100 Sobic002G131100 Sobic010G087100--Sobic002G131100 Sobic010G087100--Sobic008G090400 Sobic010G087100--Sobic008G118100 Sobic002G238800 Sobic002G238800 Sobic010G087100--Sobic002G238800 Sobic008G160600 Sobic008G160600 Sobic010G087100--Sobic008G160600 Sobic009G002200 Sobic009G002200 Sobic010G087100--Sobic009G002200 Sobic002G021200--Sobic007G187700 Sobic001G377700 Sobic001G377700 Sobic002G021200--Sobic001G377700 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic006G127200 Sobic006G127200 Sobic002G123600--Sobic006G127200 Sobic002G123600--Sobic008G090400 Sobic004G306100 Sobic004G306100 Sobic002G123600--Sobic004G306100 Sobic002G123600--Sobic002G095300 Sobic002G271400 Sobic002G271400 Sobic002G123600--Sobic002G271400 Sobic003G397100 Sobic003G397100 Sobic002G123600--Sobic003G397100 Sobic001G242300 Sobic001G242300 Sobic002G123600--Sobic001G242300 Sobic003G411700 Sobic003G411700 Sobic002G123600--Sobic003G411700 Sobic004G129500 Sobic004G129500 Sobic002G123600--Sobic004G129500 Sobic007G187700--Sobic002G168000 Sobic007G187700--Sobic002G021200 Sobic005G153000 Sobic005G153000 Sobic007G187700--Sobic005G153000 Sobic001G104500 Sobic001G104500 Sobic007G187700--Sobic001G104500 Sobic007G187700--Sobic001G377700 Sobic006G275500 Sobic006G275500 Sobic007G187700--Sobic006G275500 Sobic004G317000 Sobic004G317000 Sobic007G187700--Sobic004G317000 Sobic004G282601 Sobic004G282601 Sobic007G187700--Sobic004G282601 Sobic007G187700--Sobic009G077300 Sobic008G118100--Sobic007G050800 Sobic008G118100--Sobic002G187600 Sobic008G118100--Sobic004G286200 Sobic008G118100--Sobic006G281900 Sobic009G225500 Sobic009G225500 Sobic008G118100--Sobic009G225500 Sobic008G118100--Sobic002G095300 Sobic008G118100--Sobic009G002200 Sobic008G118100--Sobic008G090400 Sobic008G118100--Sobic005G157300 Sobic008G090400--Sobic002G123600 Sobic008G090400--Sobic002G095300 Sobic008G090400--Sobic010G087100 Sobic008G090400--Sobic008G118100 Sobic008G090400--Sobic006G127200 Sobic008G090400--Sobic002G187600 Sobic003G331000 Sobic003G331000 Sobic008G090400--Sobic003G331000 Sobic001G242500 Sobic001G242500 Sobic008G090400--Sobic001G242500 Sobic008G090400--Sobic004G306100 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G168000--Sobic002G021200 Sobic002G168000--Sobic006G281900 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic002G168000--Sobic006G016700 Sobic002G168000--Sobic001G104500 Sobic009G081800 Sobic009G081800 Sobic006G126800--Sobic009G081800 Sobic010G252200 Sobic010G252200 Sobic006G126800--Sobic010G252200 Sobic010G269800 Sobic010G269800 Sobic006G126800--Sobic010G269800 Sobic002G426100 Sobic002G426100 Sobic006G126800--Sobic002G426100 Sobic006G126800--Sobic006G127200 Sobic002G173400 Sobic002G173400 Sobic006G126800--Sobic002G173400 Sobic006G126800--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic006G126800--Sobic002G286632 Sobic005G210500 Sobic005G210500 Sobic006G126800--Sobic005G210500
Octagon: transcription factors


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