Gene annotation
Transcriptome id Sobic.003G129500.3,Sobic.003G129500.4,Sobic.003G129500.5
Synonym Sb03g011020, AGO4, OCP11
Functional annotation argonaute, putative, expressed
UniProt A0A1B6Q2W1
Pfam PF16488 PF08699 PF02170 PF16486 PF02171
Panther DB PTHR22891 PTHR22891:SF56
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G27040 : Argonaute family protein
RAP-DB (Rice) LOC_Os01g16870.4,LOC_Os01g16870.3,LOC_Os01g16870.2 : argonaute, putative, expressed
MaizeGDB (Corn) Zm00025a024120 , Zm00025a035218
Brachypodium KQK03878
Barley -
Wheat TraesCS3A02G188400 , TraesCS3B02G217300 , TraesCS3B02G217300 , TraesCS3D02G191600 , TraesCS3D02G191600 , TraesCS3D02G191600 , TraesCS3D02G191600 , TraesCS3D02G191600 , TraesCS3D02G191600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G153000 agenet domain containing protein, expressed -
2 Sobic.002G112000 protein binding protein, putative, expressed -
3 Sobic.002G168000 expressed protein -
4 Sobic.009G012400 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
5 Sobic.010G250400 OsSub52 - Putative Subtilisin homologue, expressed -
6 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
7 Sobic.003G370300 GPI transamidase subunit PIG-U domain containing protein, expressed K10879: DNA-repair protein XRCC2
8 Sobic.010G222800 expressed protein -
9 Sobic.003G183466 - -
10 Sobic.008G046200 PHD-finger family protein, expressed -
11 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
12 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.007G187700 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
15 Sobic.003G072500 transcription factor X1, putative, expressed -
16 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
17 Sobic.009G002200 formin-like protein 1 precursor, putative, expressed -
18 Sobic.009G077300 protein kinase, putative, expressed -
19 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
20 Sobic.005G196600 expressed protein -


Gene co-expression network
sample Sobic003G129500 Sobic003G129500 Sobic005G153000 Sobic005G153000 Sobic003G129500--Sobic005G153000 Sobic002G112000 Sobic002G112000 Sobic003G129500--Sobic002G112000 Sobic002G168000 Sobic002G168000 Sobic003G129500--Sobic002G168000 Sobic009G012400 Sobic009G012400 Sobic003G129500--Sobic009G012400 Sobic010G250400 Sobic010G250400 Sobic003G129500--Sobic010G250400 Sobic003G423800 Sobic003G423800 Sobic003G129500--Sobic003G423800 Sobic003G370300 Sobic003G370300 Sobic003G129500--Sobic003G370300 Sobic010G222800 Sobic010G222800 Sobic003G129500--Sobic010G222800 Sobic003G183466 Sobic003G183466 Sobic003G129500--Sobic003G183466 Sobic009G077300 Sobic009G077300 Sobic005G153000--Sobic009G077300 Sobic005G153000--Sobic002G168000 Sobic004G282601 Sobic004G282601 Sobic005G153000--Sobic004G282601 Sobic010G037901 Sobic010G037901 Sobic005G153000--Sobic010G037901 Sobic003G290400 Sobic003G290400 Sobic005G153000--Sobic003G290400 Sobic007G187700 Sobic007G187700 Sobic005G153000--Sobic007G187700 Sobic006G221300 Sobic006G221300 Sobic005G153000--Sobic006G221300 Sobic005G153000--Sobic003G129500 Sobic005G196600 Sobic005G196600 Sobic005G153000--Sobic005G196600 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic008G070700 Sobic008G070700 Sobic002G112000--Sobic008G070700 Sobic002G112000--Sobic010G222800 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic002G168000--Sobic007G187700 Sobic002G168000--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic006G275500 Sobic006G275500 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic002G168000--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic002G168000--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic002G168000--Sobic001G104500 Sobic009G012400--Sobic003G423800 Sobic009G012400--Sobic003G129500 Sobic009G012400--Sobic002G112000 Sobic007G014100 Sobic007G014100 Sobic009G012400--Sobic007G014100 Sobic008G046200 Sobic008G046200 Sobic009G012400--Sobic008G046200 Sobic009G136000 Sobic009G136000 Sobic009G012400--Sobic009G136000 Sobic009G012400--Sobic010G222800 Sobic003G002000 Sobic003G002000 Sobic009G012400--Sobic003G002000 Sobic010G024000 Sobic010G024000 Sobic009G012400--Sobic010G024000 Sobic010G250400--Sobic009G188900 Sobic010G250400--Sobic005G153000 Sobic010G250400--Sobic002G021200 Sobic003G147500 Sobic003G147500 Sobic010G250400--Sobic003G147500 Sobic010G250400--Sobic002G168000 Sobic009G207400 Sobic009G207400 Sobic010G250400--Sobic009G207400 Sobic010G250400--Sobic007G187700 Sobic001G054700 Sobic001G054700 Sobic010G250400--Sobic001G054700 Sobic001G532800 Sobic001G532800 Sobic010G250400--Sobic001G532800 Sobic008G180400 Sobic008G180400 Sobic003G423800--Sobic008G180400 Sobic008G180200 Sobic008G180200 Sobic003G423800--Sobic008G180200 Sobic003G423800--Sobic010G222800 Sobic003G423800--Sobic009G012400 Sobic003G343200 Sobic003G343200 Sobic003G423800--Sobic003G343200 Sobic003G423800--Sobic003G129500 Sobic010G009700 Sobic010G009700 Sobic003G423800--Sobic010G009700 Sobic003G423800--Sobic002G112000 Sobic003G423800--Sobic007G014100 Sobic003G370300--Sobic002G021200 Sobic003G370300--Sobic002G112000 Sobic003G370300--Sobic010G250400 Sobic003G370300--Sobic003G129500 Sobic003G370300--Sobic005G153000 Sobic007G121600 Sobic007G121600 Sobic003G370300--Sobic007G121600 Sobic003G370300--Sobic002G317700 Sobic001G377700 Sobic001G377700 Sobic003G370300--Sobic001G377700 Sobic003G370300--Sobic001G054700 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic003G411700 Sobic003G411700 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic010G222800--Sobic008G070700 Sobic002G271400 Sobic002G271400 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic010G222800--Sobic003G423800 Sobic008G131900 Sobic008G131900 Sobic010G222800--Sobic008G131900 Sobic003G326500 Sobic003G326500 Sobic003G183466--Sobic003G326500 Sobic010G143600 Sobic010G143600 Sobic003G183466--Sobic010G143600 Sobic002G173400 Sobic002G173400 Sobic003G183466--Sobic002G173400 Sobic003G183466--Sobic003G129500 Sobic004G278900 Sobic004G278900 Sobic003G183466--Sobic004G278900 Sobic009G120400 Sobic009G120400 Sobic003G183466--Sobic009G120400 Sobic002G095300 Sobic002G095300 Sobic003G183466--Sobic002G095300 Sobic002G286632 Sobic002G286632 Sobic003G183466--Sobic002G286632 Sobic003G183466--Sobic008G046200
Octagon: transcription factors


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