Gene annotation
Transcriptome id Sobic.009G012400.2
Synonym RPA70A, RPA1A, ATRPA70A, ATRPA1A
Functional annotation RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
UniProt C5YYH8
Pfam PF04057 PF01336 PF08646 PF16900
Panther DB PTHR23273 PTHR23273:SF12
NCBI CDD -
KEGG Orthology K07466; RFA1, RPA1, replication factor A1
Gene Ontology GO:0006260; DNA replication GO:0005634nucleus GO:0003677DNA binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G45400 : Replication factor-A protein 1-related
RAP-DB (Rice) LOC_Os05g02040.1 : RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed
MaizeGDB (Corn) Zm00025a040948
Brachypodium -
Barley HORVU1Hr1G004910.1 , HORVU1Hr1G018380.3 , HORVU1Hr1G004910.4 , HORVU1Hr1G004910.3 , HORVU1Hr1G004910.2 , HORVU1Hr1G018380.5 , HORVU1Hr1G018380.4 , HORVU1Hr1G018380.1 , HORVU1Hr1G018380.2
Wheat TraesCS1D02G086400 , TraesCS1A02G085000 , TraesCS1A02G032700 , TraesCS1A02G032700 , TraesCS1B02G102200 , TraesCS1B02G102200 , TraesCS1B02G040800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
2 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
3 Sobic.002G112000 protein binding protein, putative, expressed -
4 Sobic.007G014100 GDSL-like lipase/acylhydrolase, putative, expressed -
5 Sobic.008G046200 PHD-finger family protein, expressed -
6 Sobic.009G136000 microtubule associated protein, putative, expressed K16732: protein regulator of cytokinesis 1
7 Sobic.010G222800 expressed protein -
8 Sobic.003G002000 expressed protein -
9 Sobic.010G024000 transketolase, chloroplast precursor, putative, expressed K00615: E2.2.1.1, tktA, transketolase
10 Sobic.009G125800 expressed protein -
11 Sobic.010G030000 leucine rich repeat protein, putative, expressed -
12 Sobic.010G243100 RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
13 Sobic.008G180200 expressed protein -
14 Sobic.010G009700 OsFBX182 - F-box domain containing protein, expressed -
15 Sobic.002G173400 expressed protein -
16 Sobic.009G058100 FHA domain containing protein, putative, expressed -
17 Sobic.002G052800 FAR1 family protein, expressed -
18 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
19 Sobic.008G070700 leafbladeless1, putative, expressed -
20 Sobic.003G072500 transcription factor X1, putative, expressed -


Gene co-expression network
sample Sobic009G012400 Sobic009G012400 Sobic003G423800 Sobic003G423800 Sobic009G012400--Sobic003G423800 Sobic003G129500 Sobic003G129500 Sobic009G012400--Sobic003G129500 Sobic002G112000 Sobic002G112000 Sobic009G012400--Sobic002G112000 Sobic007G014100 Sobic007G014100 Sobic009G012400--Sobic007G014100 Sobic008G046200 Sobic008G046200 Sobic009G012400--Sobic008G046200 Sobic009G136000 Sobic009G136000 Sobic009G012400--Sobic009G136000 Sobic010G222800 Sobic010G222800 Sobic009G012400--Sobic010G222800 Sobic003G002000 Sobic003G002000 Sobic009G012400--Sobic003G002000 Sobic010G024000 Sobic010G024000 Sobic009G012400--Sobic010G024000 Sobic008G180400 Sobic008G180400 Sobic003G423800--Sobic008G180400 Sobic008G180200 Sobic008G180200 Sobic003G423800--Sobic008G180200 Sobic003G423800--Sobic010G222800 Sobic003G423800--Sobic009G012400 Sobic003G343200 Sobic003G343200 Sobic003G423800--Sobic003G343200 Sobic003G423800--Sobic003G129500 Sobic010G009700 Sobic010G009700 Sobic003G423800--Sobic010G009700 Sobic003G423800--Sobic002G112000 Sobic003G423800--Sobic007G014100 Sobic005G153000 Sobic005G153000 Sobic003G129500--Sobic005G153000 Sobic003G129500--Sobic002G112000 Sobic002G168000 Sobic002G168000 Sobic003G129500--Sobic002G168000 Sobic003G129500--Sobic009G012400 Sobic010G250400 Sobic010G250400 Sobic003G129500--Sobic010G250400 Sobic003G129500--Sobic003G423800 Sobic003G370300 Sobic003G370300 Sobic003G129500--Sobic003G370300 Sobic003G129500--Sobic010G222800 Sobic003G183466 Sobic003G183466 Sobic003G129500--Sobic003G183466 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic008G070700 Sobic008G070700 Sobic002G112000--Sobic008G070700 Sobic002G112000--Sobic010G222800 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200 Sobic007G014100--Sobic003G423800 Sobic007G014100--Sobic009G012400 Sobic007G014100--Sobic008G180200 Sobic003G005500 Sobic003G005500 Sobic007G014100--Sobic003G005500 Sobic007G014100--Sobic008G180400 Sobic007G014100--Sobic008G046200 Sobic001G095432 Sobic001G095432 Sobic007G014100--Sobic001G095432 Sobic010G111750 Sobic010G111750 Sobic007G014100--Sobic010G111750 Sobic007G014100--Sobic003G129500 Sobic002G144600 Sobic002G144600 Sobic008G046200--Sobic002G144600 Sobic008G046200--Sobic003G005500 Sobic007G122700 Sobic007G122700 Sobic008G046200--Sobic007G122700 Sobic008G046200--Sobic003G129500 Sobic002G286632 Sobic002G286632 Sobic008G046200--Sobic002G286632 Sobic008G046200--Sobic009G012400 Sobic004G222200 Sobic004G222200 Sobic008G046200--Sobic004G222200 Sobic008G141900 Sobic008G141900 Sobic008G046200--Sobic008G141900 Sobic008G046200--Sobic003G183466 Sobic010G038200 Sobic010G038200 Sobic009G136000--Sobic010G038200 Sobic001G082800 Sobic001G082800 Sobic009G136000--Sobic001G082800 Sobic009G125800 Sobic009G125800 Sobic009G136000--Sobic009G125800 Sobic008G131900 Sobic008G131900 Sobic009G136000--Sobic008G131900 Sobic010G030000 Sobic010G030000 Sobic009G136000--Sobic010G030000 Sobic006G193100 Sobic006G193100 Sobic009G136000--Sobic006G193100 Sobic002G390800 Sobic002G390800 Sobic009G136000--Sobic002G390800 Sobic009G131200 Sobic009G131200 Sobic009G136000--Sobic009G131200 Sobic002G052800 Sobic002G052800 Sobic009G136000--Sobic002G052800 Sobic010G222800--Sobic003G343200 Sobic010G222800--Sobic010G024000 Sobic003G411700 Sobic003G411700 Sobic010G222800--Sobic003G411700 Sobic010G222800--Sobic002G112000 Sobic010G222800--Sobic008G070700 Sobic002G271400 Sobic002G271400 Sobic010G222800--Sobic002G271400 Sobic007G076200 Sobic007G076200 Sobic010G222800--Sobic007G076200 Sobic010G222800--Sobic003G423800 Sobic010G222800--Sobic008G131900 Sobic006G274200 Sobic006G274200 Sobic003G002000--Sobic006G274200 Sobic007G209200 Sobic007G209200 Sobic003G002000--Sobic007G209200 Sobic006G163300 Sobic006G163300 Sobic003G002000--Sobic006G163300 Sobic003G019900 Sobic003G019900 Sobic003G002000--Sobic003G019900 Sobic003G010700 Sobic003G010700 Sobic003G002000--Sobic003G010700 Sobic001G101900 Sobic001G101900 Sobic003G002000--Sobic001G101900 Sobic008G138000 Sobic008G138000 Sobic003G002000--Sobic008G138000 Sobic010G269700 Sobic010G269700 Sobic003G002000--Sobic010G269700 Sobic007G147200 Sobic007G147200 Sobic003G002000--Sobic007G147200 Sobic010G024000--Sobic010G222800 Sobic010G024000--Sobic008G131900 Sobic010G024000--Sobic007G076200 Sobic010G024000--Sobic003G411700 Sobic010G024000--Sobic002G271400 Sobic002G173400 Sobic002G173400 Sobic010G024000--Sobic002G173400 Sobic010G024000--Sobic006G193100 Sobic010G024000--Sobic003G343200 Sobic010G024000--Sobic002G052800
Octagon: transcription factors


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