Gene annotation
Transcriptome id Sobic.008G180400.1,Sobic.008G180400.2,Sobic.008G180400.3
Synonym
Functional annotation DNA-binding protein-like, putative, expressed
UniProt A0A1Z5R7I2 , C5YSH6 , A0A1Z5R8C1
Pfam PF13696 PF08783 PF13696
Panther DB PTHR15439 PTHR15439:SF6 PTHR15439:SF6 PTHR15439
NCBI CDD -
KEGG Orthology K10624; E3 ubiquitin-protein ligase RBBP6
Gene Ontology GO:0005634; nucleus GO:0008270zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G47430 : DWNN domain, a CCHC-type zinc finger
RAP-DB (Rice) LOC_Os03g45730.1 : DNA-binding protein-like, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.008G180400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G423800 endonuclease, putative, expressed K08991: crossover junction endonuclease MUS81
2 Sobic.005G172700 expressed protein -
3 Sobic.008G180200 expressed protein -
4 Sobic.003G091300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
5 Sobic.001G457600 piwi domain containing protein, expressed -
6 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
7 Sobic.010G243100 RPA2C - Putative single-stranded DNA binding complex subunit 2, expressed K10739: RFA2, replication factor A2
8 Sobic.003G289700 ulp1 protease family protein, putative, expressed K16287: ubiquitin-like-specific protease 1C/D
9 Sobic.002G112000 protein binding protein, putative, expressed -
10 Sobic.001G137500 ankyrin, putative, expressed -
11 Sobic.002G061800 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.010G111750 - -
13 Sobic.010G222800 expressed protein -
14 Sobic.007G014100 GDSL-like lipase/acylhydrolase, putative, expressed -
15 Sobic.008G098700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pumilio-family RNA binding repeat containing protein, expressed -
16 Sobic.002G238800 mago nashi, putative, expressed K12877: protein mago nashi
17 Sobic.001G137400 ankyrin, putative, expressed -
18 Sobic.009G012400 RPA1C - Putative single-stranded DNA binding complex subunit 1, expressed K07466: RFA1, RPA1, replication factor A1
19 Sobic.002G205000 ZOS9-06 - C2H2 zinc finger protein, expressed -
20 Sobic.003G250100 homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic008G180400 Sobic008G180400 Sobic003G423800 Sobic003G423800 Sobic008G180400--Sobic003G423800 Sobic005G172700 Sobic005G172700 Sobic008G180400--Sobic005G172700 Sobic008G180200 Sobic008G180200 Sobic008G180400--Sobic008G180200 Sobic003G091300 Sobic003G091300 Sobic008G180400--Sobic003G091300 Sobic001G457600 Sobic001G457600 Sobic008G180400--Sobic001G457600 Sobic002G258000 Sobic002G258000 Sobic008G180400--Sobic002G258000 Sobic010G243100 Sobic010G243100 Sobic008G180400--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic008G180400--Sobic003G289700 Sobic002G112000 Sobic002G112000 Sobic008G180400--Sobic002G112000 Sobic003G423800--Sobic008G180400 Sobic003G423800--Sobic008G180200 Sobic010G222800 Sobic010G222800 Sobic003G423800--Sobic010G222800 Sobic009G012400 Sobic009G012400 Sobic003G423800--Sobic009G012400 Sobic003G343200 Sobic003G343200 Sobic003G423800--Sobic003G343200 Sobic003G129500 Sobic003G129500 Sobic003G423800--Sobic003G129500 Sobic010G009700 Sobic010G009700 Sobic003G423800--Sobic010G009700 Sobic003G423800--Sobic002G112000 Sobic007G014100 Sobic007G014100 Sobic003G423800--Sobic007G014100 Sobic002G238800 Sobic002G238800 Sobic005G172700--Sobic002G238800 Sobic005G172700--Sobic003G289700 Sobic005G172700--Sobic008G180400 Sobic001G081800 Sobic001G081800 Sobic005G172700--Sobic001G081800 Sobic005G164800 Sobic005G164800 Sobic005G172700--Sobic005G164800 Sobic004G218000 Sobic004G218000 Sobic005G172700--Sobic004G218000 Sobic005G172700--Sobic003G343200 Sobic001G137400 Sobic001G137400 Sobic005G172700--Sobic001G137400 Sobic007G056900 Sobic007G056900 Sobic005G172700--Sobic007G056900 Sobic008G180200--Sobic003G423800 Sobic008G180200--Sobic008G180400 Sobic003G005500 Sobic003G005500 Sobic008G180200--Sobic003G005500 Sobic002G286632 Sobic002G286632 Sobic008G180200--Sobic002G286632 Sobic003G216600 Sobic003G216600 Sobic008G180200--Sobic003G216600 Sobic008G180200--Sobic010G009700 Sobic010G030000 Sobic010G030000 Sobic008G180200--Sobic010G030000 Sobic006G081700 Sobic006G081700 Sobic008G180200--Sobic006G081700 Sobic008G180200--Sobic007G014100 Sobic010G111750 Sobic010G111750 Sobic003G091300--Sobic010G111750 Sobic001G288000 Sobic001G288000 Sobic003G091300--Sobic001G288000 Sobic002G178700 Sobic002G178700 Sobic003G091300--Sobic002G178700 Sobic001G137500 Sobic001G137500 Sobic003G091300--Sobic001G137500 Sobic003G006000 Sobic003G006000 Sobic003G091300--Sobic003G006000 Sobic003G091300--Sobic002G258000 Sobic001G419500 Sobic001G419500 Sobic003G091300--Sobic001G419500 Sobic002G205000 Sobic002G205000 Sobic003G091300--Sobic002G205000 Sobic004G031501 Sobic004G031501 Sobic003G091300--Sobic004G031501 Sobic001G457600--Sobic001G137500 Sobic010G194600 Sobic010G194600 Sobic001G457600--Sobic010G194600 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic007G128200 Sobic007G128200 Sobic001G457600--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G457600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic007G193300 Sobic007G193300 Sobic001G457600--Sobic007G193300 Sobic002G258000--Sobic001G137500 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic002G258000--Sobic001G137400 Sobic002G258000--Sobic003G006000 Sobic009G243000 Sobic009G243000 Sobic002G258000--Sobic009G243000 Sobic002G258000--Sobic007G193300 Sobic002G258000--Sobic010G194600 Sobic002G258000--Sobic002G178700 Sobic009G138300 Sobic009G138300 Sobic010G243100--Sobic009G138300 Sobic010G243100--Sobic010G030000 Sobic010G243100--Sobic010G009700 Sobic001G500500 Sobic001G500500 Sobic010G243100--Sobic001G500500 Sobic010G243100--Sobic003G289700 Sobic010G243100--Sobic008G180400 Sobic009G136000 Sobic009G136000 Sobic010G243100--Sobic009G136000 Sobic010G243100--Sobic001G288000 Sobic010G243100--Sobic010G222800 Sobic003G289700--Sobic005G172700 Sobic003G289700--Sobic003G343200 Sobic003G289700--Sobic010G222800 Sobic010G237800 Sobic010G237800 Sobic003G289700--Sobic010G237800 Sobic003G320100 Sobic003G320100 Sobic003G289700--Sobic003G320100 Sobic006G106200 Sobic006G106200 Sobic003G289700--Sobic006G106200 Sobic003G289700--Sobic009G138300 Sobic003G289700--Sobic010G243100 Sobic005G160200 Sobic005G160200 Sobic003G289700--Sobic005G160200 Sobic009G057800 Sobic009G057800 Sobic002G112000--Sobic009G057800 Sobic007G201900 Sobic007G201900 Sobic002G112000--Sobic007G201900 Sobic002G317700 Sobic002G317700 Sobic002G112000--Sobic002G317700 Sobic008G070700 Sobic008G070700 Sobic002G112000--Sobic008G070700 Sobic002G112000--Sobic010G222800 Sobic002G112000--Sobic003G129500 Sobic006G272800 Sobic006G272800 Sobic002G112000--Sobic006G272800 Sobic004G190500 Sobic004G190500 Sobic002G112000--Sobic004G190500 Sobic009G002200 Sobic009G002200 Sobic002G112000--Sobic009G002200
Octagon: transcription factors


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