Gene annotation
Transcriptome id Sobic.002G061800.2
Synonym AGO5, Sb02g005150
Functional annotation PAZ domain containing protein, putative, expressed
UniProt A0A1W0W2J7
Pfam PF16487 PF16488 PF08699 PF02170 PF16486 PF02171
Panther DB PTHR22891 PTHR22891:SF24
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT2G27880 : Argonaute family protein
RAP-DB (Rice) LOC_Os03g58600.1 : PAZ domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a016559 , Zm00025a016053
Brachypodium -
Barley -
Wheat TraesCS5B02G455700 , TraesCS2D02G176500 , TraesCS2D02G176500 , TraesCS5D02G454200 , TraesCS5D02G454200 , TraesCS5D02G454600 , TraesCS2A02G168900 , TraesCS2A02G168900 , TraesCS5B02G451400 , TraesCS5B02G451400 , TraesCS4A02G288300 , TraesCS4A02G288300 , TraesCS5A02G446000 , TraesCS5A02G446000 , TraesCS5B02G468000 , TraesCS3B02G287600 , TraesCS3B02G287600 , TraesCS5B02G452500 , TraesCS5D02G192700 , TraesCS5B02G458100
Populus PNT55850 , PNT55849


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cDNA sequences
Sobic.002G061800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G457600 piwi domain containing protein, expressed -
2 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
3 Sobic.009G042600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G258000 homologous to AGL2 and AGL4: expression analysis and mapping data suggest that it is the ortholog of OsMADS24.(PubMedID : 9065695)@OsMADS8 - MADS-box family gene with MIKCc type-box, expressed -
5 Sobic.004G218000 SET domain containing protein, expressed -
6 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
7 Sobic.003G217300 zinc finger, C3HC4 type family protein, expressed -
8 Sobic.001G137500 ankyrin, putative, expressed -
9 Sobic.005G163500 dnaJ domain containing protein, expressed -
10 Sobic.001G137400 ankyrin, putative, expressed -
11 Sobic.007G193300 OsMADS7 - MADS-box family gene with MIKCc type-box, expressed -
12 Sobic.009G243000 OsFBL2 - F-box domain and LRR containing protein, expressed -
13 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
14 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
15 Sobic.001G132200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.001G171200 expressed protein -
17 Sobic.005G172700 expressed protein -
18 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
19 Sobic.010G194600 CW-type Zinc Finger, putative, expressed -
20 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant


Gene co-expression network
sample Sobic002G061800 Sobic002G061800 Sobic001G457600 Sobic001G457600 Sobic002G061800--Sobic001G457600 Sobic007G056900 Sobic007G056900 Sobic002G061800--Sobic007G056900 Sobic009G042600 Sobic009G042600 Sobic002G061800--Sobic009G042600 Sobic002G258000 Sobic002G258000 Sobic002G061800--Sobic002G258000 Sobic004G218000 Sobic004G218000 Sobic002G061800--Sobic004G218000 Sobic008G180400 Sobic008G180400 Sobic002G061800--Sobic008G180400 Sobic003G217300 Sobic003G217300 Sobic002G061800--Sobic003G217300 Sobic001G137500 Sobic001G137500 Sobic002G061800--Sobic001G137500 Sobic005G163500 Sobic005G163500 Sobic002G061800--Sobic005G163500 Sobic001G457600--Sobic001G137500 Sobic010G194600 Sobic010G194600 Sobic001G457600--Sobic010G194600 Sobic001G419500 Sobic001G419500 Sobic001G457600--Sobic001G419500 Sobic001G457600--Sobic002G258000 Sobic007G128200 Sobic007G128200 Sobic001G457600--Sobic007G128200 Sobic004G234600 Sobic004G234600 Sobic001G457600--Sobic004G234600 Sobic009G063700 Sobic009G063700 Sobic001G457600--Sobic009G063700 Sobic004G281000 Sobic004G281000 Sobic001G457600--Sobic004G281000 Sobic007G193300 Sobic007G193300 Sobic001G457600--Sobic007G193300 Sobic007G056900--Sobic004G218000 Sobic005G164800 Sobic005G164800 Sobic007G056900--Sobic005G164800 Sobic007G056900--Sobic003G217300 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic005G041900 Sobic005G041900 Sobic007G056900--Sobic005G041900 Sobic001G132200 Sobic001G132200 Sobic007G056900--Sobic001G132200 Sobic007G056900--Sobic009G042600 Sobic006G062600 Sobic006G062600 Sobic007G056900--Sobic006G062600 Sobic001G137400 Sobic001G137400 Sobic009G042600--Sobic001G137400 Sobic009G042600--Sobic004G218000 Sobic009G042600--Sobic001G457600 Sobic009G042600--Sobic007G193300 Sobic003G022900 Sobic003G022900 Sobic009G042600--Sobic003G022900 Sobic009G042600--Sobic002G061800 Sobic009G042600--Sobic005G164800 Sobic006G097300 Sobic006G097300 Sobic009G042600--Sobic006G097300 Sobic009G042600--Sobic003G217300 Sobic002G258000--Sobic001G137500 Sobic002G258000--Sobic001G457600 Sobic002G258000--Sobic001G419500 Sobic002G258000--Sobic001G137400 Sobic003G006000 Sobic003G006000 Sobic002G258000--Sobic003G006000 Sobic009G243000 Sobic009G243000 Sobic002G258000--Sobic009G243000 Sobic002G258000--Sobic007G193300 Sobic002G258000--Sobic010G194600 Sobic002G178700 Sobic002G178700 Sobic002G258000--Sobic002G178700 Sobic004G218000--Sobic003G217300 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic004G218000--Sobic005G041900 Sobic004G218000--Sobic003G022900 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic003G423800 Sobic003G423800 Sobic008G180400--Sobic003G423800 Sobic005G172700 Sobic005G172700 Sobic008G180400--Sobic005G172700 Sobic008G180200 Sobic008G180200 Sobic008G180400--Sobic008G180200 Sobic003G091300 Sobic003G091300 Sobic008G180400--Sobic003G091300 Sobic008G180400--Sobic001G457600 Sobic008G180400--Sobic002G258000 Sobic010G243100 Sobic010G243100 Sobic008G180400--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic008G180400--Sobic003G289700 Sobic002G112000 Sobic002G112000 Sobic008G180400--Sobic002G112000 Sobic003G217300--Sobic004G218000 Sobic003G217300--Sobic005G164800 Sobic003G217300--Sobic007G056900 Sobic010G067200 Sobic010G067200 Sobic003G217300--Sobic010G067200 Sobic003G217300--Sobic005G041900 Sobic003G217300--Sobic009G042600 Sobic002G259301 Sobic002G259301 Sobic003G217300--Sobic002G259301 Sobic003G217300--Sobic002G221100 Sobic003G217300--Sobic007G193300 Sobic001G137500--Sobic001G419500 Sobic001G137500--Sobic002G258000 Sobic001G137500--Sobic001G457600 Sobic001G137500--Sobic002G178700 Sobic001G137500--Sobic003G006000 Sobic001G137500--Sobic007G193300 Sobic001G137500--Sobic001G137400 Sobic001G137500--Sobic010G194600 Sobic003G088600 Sobic003G088600 Sobic001G137500--Sobic003G088600 Sobic001G071600 Sobic001G071600 Sobic005G163500--Sobic001G071600 Sobic005G163500--Sobic004G281000 Sobic005G163500--Sobic009G243000 Sobic010G183800 Sobic010G183800 Sobic005G163500--Sobic010G183800 Sobic005G163500--Sobic001G457600 Sobic001G456000 Sobic001G456000 Sobic005G163500--Sobic001G456000 Sobic007G121200 Sobic007G121200 Sobic005G163500--Sobic007G121200 Sobic002G078900 Sobic002G078900 Sobic005G163500--Sobic002G078900 Sobic003G046400 Sobic003G046400 Sobic005G163500--Sobic003G046400
Octagon: transcription factors


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