Gene annotation
Transcriptome id Sobic.001G132200.2,Sobic.001G132200.1
Synonym HUA1, Sb01g011590
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt A0A1Z5S5G3 , A0A1Z5S5H7
Pfam PF00642
Panther DB PTHR12547 PTHR12547:SF65
NCBI CDD KOG1677; CCCH-type Zn-finger protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12680 : floral homeotic protein (HUA1)
RAP-DB (Rice) LOC_Os12g21700.1,LOC_Os11g28270.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a007654
Brachypodium PNT70608 , PNT70607
Barley -
Wheat TraesCS1B02G150600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G313400 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
2 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
3 Sobic.004G218000 SET domain containing protein, expressed -
4 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
5 Sobic.003G027000 OsMADS3 - MADS-box family gene with MIKCc type-box, expressed K09264: MADS-box transcription factor, plant
6 Sobic.006G215800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@microtubule associated protein, putative, expressed -
7 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -
8 Sobic.001G218600 MATH domain containing protein, expressed -
9 Sobic.005G070301 - K03007: RPB10, DNA-directed RNA polymerases I, II, and III subunit RPABC5
10 Sobic.001G051100 uncharacterized PE-PGRS family protein PE_PGRS3 precursor, putative, expressed -
11 Sobic.002G061800 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.010G051800 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.001G288000 ankyrin repeat domain containing protein, putative, expressed -
14 Sobic.002G274700 glycosyl transferase family 8, putative, expressed K13648: alpha-1,4-galacturonosyltransferase
15 Sobic.002G299200 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
16 Sobic.003G396500 ZOS5-12 - C2H2 zinc finger protein, expressed -
17 Sobic.003G044000 lipase class 3 family protein, putative, expressed -
18 Sobic.008G180400 DNA-binding protein-like, putative, expressed K10624: E3 ubiquitin-protein ligase RBBP6
19 Sobic.009G066600 expressed protein -
20 Sobic.009G119100 hexokinase, putative, expressed K00844: hexokinase


Gene co-expression network
sample Sobic001G132200 Sobic001G132200 Sobic004G313400 Sobic004G313400 Sobic001G132200--Sobic004G313400 Sobic003G090000 Sobic003G090000 Sobic001G132200--Sobic003G090000 Sobic004G218000 Sobic004G218000 Sobic001G132200--Sobic004G218000 Sobic007G056900 Sobic007G056900 Sobic001G132200--Sobic007G056900 Sobic003G027000 Sobic003G027000 Sobic001G132200--Sobic003G027000 Sobic006G215800 Sobic006G215800 Sobic001G132200--Sobic006G215800 Sobic009G132400 Sobic009G132400 Sobic001G132200--Sobic009G132400 Sobic001G218600 Sobic001G218600 Sobic001G132200--Sobic001G218600 Sobic005G070301 Sobic005G070301 Sobic001G132200--Sobic005G070301 Sobic004G313400--Sobic003G090000 Sobic004G313400--Sobic003G027000 Sobic004G313400--Sobic001G218600 Sobic004G313400--Sobic005G070301 Sobic004G313400--Sobic006G215800 Sobic002G151500 Sobic002G151500 Sobic004G313400--Sobic002G151500 Sobic003G396500 Sobic003G396500 Sobic004G313400--Sobic003G396500 Sobic009G066600 Sobic009G066600 Sobic004G313400--Sobic009G066600 Sobic003G044000 Sobic003G044000 Sobic004G313400--Sobic003G044000 Sobic003G090000--Sobic003G027000 Sobic003G090000--Sobic001G218600 Sobic002G299200 Sobic002G299200 Sobic003G090000--Sobic002G299200 Sobic003G090000--Sobic006G215800 Sobic003G090000--Sobic003G396500 Sobic003G090000--Sobic004G313400 Sobic003G090000--Sobic003G044000 Sobic003G090000--Sobic005G070301 Sobic010G157200 Sobic010G157200 Sobic003G090000--Sobic010G157200 Sobic003G217300 Sobic003G217300 Sobic004G218000--Sobic003G217300 Sobic004G218000--Sobic007G056900 Sobic005G164800 Sobic005G164800 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic005G041900 Sobic005G041900 Sobic004G218000--Sobic005G041900 Sobic003G022900 Sobic003G022900 Sobic004G218000--Sobic003G022900 Sobic009G042600 Sobic009G042600 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic007G056900--Sobic004G218000 Sobic007G056900--Sobic005G164800 Sobic007G056900--Sobic003G217300 Sobic002G061800 Sobic002G061800 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic007G056900--Sobic005G041900 Sobic007G056900--Sobic001G132200 Sobic007G056900--Sobic009G042600 Sobic006G062600 Sobic006G062600 Sobic007G056900--Sobic006G062600 Sobic003G027000--Sobic003G090000 Sobic003G027000--Sobic001G218600 Sobic003G027000--Sobic002G299200 Sobic003G027000--Sobic005G070301 Sobic003G027000--Sobic004G313400 Sobic003G027000--Sobic003G396500 Sobic003G027000--Sobic006G215800 Sobic003G027000--Sobic003G044000 Sobic009G152120 Sobic009G152120 Sobic003G027000--Sobic009G152120 Sobic006G215800--Sobic003G090000 Sobic006G215800--Sobic003G027000 Sobic006G215800--Sobic001G218600 Sobic006G215800--Sobic004G313400 Sobic006G215800--Sobic003G396500 Sobic006G215800--Sobic002G299200 Sobic008G098700 Sobic008G098700 Sobic006G215800--Sobic008G098700 Sobic007G060100 Sobic007G060100 Sobic006G215800--Sobic007G060100 Sobic006G215800--Sobic005G070301 Sobic002G099866 Sobic002G099866 Sobic009G132400--Sobic002G099866 Sobic002G266600 Sobic002G266600 Sobic009G132400--Sobic002G266600 Sobic001G509100 Sobic001G509100 Sobic009G132400--Sobic001G509100 Sobic004G340566 Sobic004G340566 Sobic009G132400--Sobic004G340566 Sobic003G167200 Sobic003G167200 Sobic009G132400--Sobic003G167200 Sobic001G264600 Sobic001G264600 Sobic009G132400--Sobic001G264600 Sobic001G261529 Sobic001G261529 Sobic009G132400--Sobic001G261529 Sobic003G035001 Sobic003G035001 Sobic009G132400--Sobic003G035001 Sobic001G324800 Sobic001G324800 Sobic009G132400--Sobic001G324800 Sobic001G218600--Sobic003G090000 Sobic001G218600--Sobic003G027000 Sobic001G218600--Sobic003G396500 Sobic001G218600--Sobic005G070301 Sobic001G506400 Sobic001G506400 Sobic001G218600--Sobic001G506400 Sobic001G218600--Sobic003G044000 Sobic001G218600--Sobic007G060100 Sobic001G218600--Sobic010G157200 Sobic010G263400 Sobic010G263400 Sobic001G218600--Sobic010G263400 Sobic005G070301--Sobic001G218600 Sobic005G070301--Sobic003G027000 Sobic005G070301--Sobic004G313400 Sobic007G144100 Sobic007G144100 Sobic005G070301--Sobic007G144100 Sobic005G070301--Sobic003G090000 Sobic005G171900 Sobic005G171900 Sobic005G070301--Sobic005G171900 Sobic003G258100 Sobic003G258100 Sobic005G070301--Sobic003G258100 Sobic003G001901 Sobic003G001901 Sobic005G070301--Sobic003G001901 Sobic005G070301--Sobic003G396500
Octagon: transcription factors


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