Gene annotation
Transcriptome id Sobic.007G056900.1,Sobic.007G056900.2
Synonym NRPD2A, NRPE2, NRPD2, DRD2, Sb07g004600, DMS2
Functional annotation DNA-directed RNA polymerase subunit, putative, expressed
UniProt C5YHJ3
Pfam PF04561 PF04567 PF04565 PF04566 PF04560 PF04563 PF00562
Panther DB PTHR20856 PTHR20856:SF22
NCBI CDD -
KEGG Orthology K16252; NRPD2, DNA-directed RNA polymerase IV and V subunit 2
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G23780 : nuclear RNA polymerase D2A
RAP-DB (Rice) LOC_Os08g07480.1 : DNA-directed RNA polymerase subunit, putative, expressed
MaizeGDB (Corn) Zm00025a055040
Brachypodium KQJ84891 , KQJ84890 , KQJ84892 , PNT61975 , PNT61974 , PNT61973 , PNT61972 , KQJ88132 , KQJ88133 , KQJ88131 , KQJ88134 , KQJ88135 , KQJ95216 , KQK03136 , KQJ84889
Barley HORVU0Hr1G005670.1 , HORVU7Hr1G076860.1 , HORVU7Hr1G076850.6 , HORVU7Hr1G076850.5 , HORVU7Hr1G076850.4 , HORVU7Hr1G076850.3 , HORVU7Hr1G076850.2 , HORVU7Hr1G076850.1
Wheat TraesCS7A02G321100 , TraesCS2B02G552400 , TraesCS7D02G318200 , TraesCS2A02G522400 , TraesCS2D02G524500 , TraesCS7B02G222200
Populus -


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cDNA sequences
Sobic.007G056900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G218000 SET domain containing protein, expressed -
2 Sobic.005G164800 pumilio-family RNA binding repeat domain containing protein, expressed -
3 Sobic.003G217300 zinc finger, C3HC4 type family protein, expressed -
4 Sobic.002G061800 PAZ domain containing protein, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
5 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
6 Sobic.005G041900 - -
7 Sobic.001G132200 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.009G042600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.006G062600 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
10 Sobic.010G193700 expressed protein -
11 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
12 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
13 Sobic.002G315100 expressed protein K15083: DNA repair protein RAD16
14 Sobic.002G354800 zinc finger family protein, putative, expressed -
15 Sobic.002G349000 UAA transporter family domain containing protein, expressed K15272: solute carrier family 35 (UDP-sugar transporter), member A1/2/3
16 Sobic.005G172800 expressed protein -
17 Sobic.003G090000 seven in absentia protein family protein, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
18 Sobic.010G067200 receptor-like protein kinase precursor, putative, expressed -
19 Sobic.005G172700 expressed protein -
20 Sobic.009G132400 expressed high in CK60 (an inefficient nitrogen user)(PubMedID : 28697783)@microtubule associated protein, putative, expressed -


Gene co-expression network
sample Sobic007G056900 Sobic007G056900 Sobic004G218000 Sobic004G218000 Sobic007G056900--Sobic004G218000 Sobic005G164800 Sobic005G164800 Sobic007G056900--Sobic005G164800 Sobic003G217300 Sobic003G217300 Sobic007G056900--Sobic003G217300 Sobic002G061800 Sobic002G061800 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic005G041900 Sobic005G041900 Sobic007G056900--Sobic005G041900 Sobic001G132200 Sobic001G132200 Sobic007G056900--Sobic001G132200 Sobic009G042600 Sobic009G042600 Sobic007G056900--Sobic009G042600 Sobic006G062600 Sobic006G062600 Sobic007G056900--Sobic006G062600 Sobic004G218000--Sobic003G217300 Sobic004G218000--Sobic007G056900 Sobic004G218000--Sobic005G164800 Sobic002G349000 Sobic002G349000 Sobic004G218000--Sobic002G349000 Sobic002G221100 Sobic002G221100 Sobic004G218000--Sobic002G221100 Sobic004G218000--Sobic005G041900 Sobic003G022900 Sobic003G022900 Sobic004G218000--Sobic003G022900 Sobic004G218000--Sobic009G042600 Sobic010G180200 Sobic010G180200 Sobic004G218000--Sobic010G180200 Sobic005G164800--Sobic003G217300 Sobic005G164800--Sobic004G218000 Sobic001G171100 Sobic001G171100 Sobic005G164800--Sobic001G171100 Sobic001G377600 Sobic001G377600 Sobic005G164800--Sobic001G377600 Sobic010G067200 Sobic010G067200 Sobic005G164800--Sobic010G067200 Sobic003G027200 Sobic003G027200 Sobic005G164800--Sobic003G027200 Sobic007G193300 Sobic007G193300 Sobic005G164800--Sobic007G193300 Sobic008G072900 Sobic008G072900 Sobic005G164800--Sobic008G072900 Sobic007G191200 Sobic007G191200 Sobic005G164800--Sobic007G191200 Sobic003G217300--Sobic004G218000 Sobic003G217300--Sobic005G164800 Sobic003G217300--Sobic007G056900 Sobic003G217300--Sobic010G067200 Sobic003G217300--Sobic005G041900 Sobic003G217300--Sobic009G042600 Sobic002G259301 Sobic002G259301 Sobic003G217300--Sobic002G259301 Sobic003G217300--Sobic002G221100 Sobic003G217300--Sobic007G193300 Sobic001G457600 Sobic001G457600 Sobic002G061800--Sobic001G457600 Sobic002G061800--Sobic007G056900 Sobic002G061800--Sobic009G042600 Sobic002G258000 Sobic002G258000 Sobic002G061800--Sobic002G258000 Sobic002G061800--Sobic004G218000 Sobic008G180400 Sobic008G180400 Sobic002G061800--Sobic008G180400 Sobic002G061800--Sobic003G217300 Sobic001G137500 Sobic001G137500 Sobic002G061800--Sobic001G137500 Sobic005G163500 Sobic005G163500 Sobic002G061800--Sobic005G163500 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G200901 Sobic006G200901 Sobic006G143300--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic006G143300--Sobic002G343000 Sobic004G014100 Sobic004G014100 Sobic006G143300--Sobic004G014100 Sobic001G081800 Sobic001G081800 Sobic006G143300--Sobic001G081800 Sobic006G143300--Sobic002G349000 Sobic002G230400 Sobic002G230400 Sobic006G143300--Sobic002G230400 Sobic006G143300--Sobic005G164800 Sobic006G186300 Sobic006G186300 Sobic006G143300--Sobic006G186300 Sobic005G041900--Sobic004G218000 Sobic005G041900--Sobic005G164800 Sobic005G041900--Sobic007G056900 Sobic005G041900--Sobic003G217300 Sobic010G193700 Sobic010G193700 Sobic005G041900--Sobic010G193700 Sobic002G174500 Sobic002G174500 Sobic005G041900--Sobic002G174500 Sobic010G109300 Sobic010G109300 Sobic005G041900--Sobic010G109300 Sobic002G354800 Sobic002G354800 Sobic005G041900--Sobic002G354800 Sobic003G027000 Sobic003G027000 Sobic005G041900--Sobic003G027000 Sobic004G313400 Sobic004G313400 Sobic001G132200--Sobic004G313400 Sobic003G090000 Sobic003G090000 Sobic001G132200--Sobic003G090000 Sobic001G132200--Sobic004G218000 Sobic001G132200--Sobic007G056900 Sobic001G132200--Sobic003G027000 Sobic006G215800 Sobic006G215800 Sobic001G132200--Sobic006G215800 Sobic009G132400 Sobic009G132400 Sobic001G132200--Sobic009G132400 Sobic001G218600 Sobic001G218600 Sobic001G132200--Sobic001G218600 Sobic005G070301 Sobic005G070301 Sobic001G132200--Sobic005G070301 Sobic001G137400 Sobic001G137400 Sobic009G042600--Sobic001G137400 Sobic009G042600--Sobic004G218000 Sobic009G042600--Sobic001G457600 Sobic009G042600--Sobic007G193300 Sobic009G042600--Sobic003G022900 Sobic009G042600--Sobic002G061800 Sobic009G042600--Sobic005G164800 Sobic006G097300 Sobic006G097300 Sobic009G042600--Sobic006G097300 Sobic009G042600--Sobic003G217300 Sobic001G392700 Sobic001G392700 Sobic006G062600--Sobic001G392700 Sobic009G056900 Sobic009G056900 Sobic006G062600--Sobic009G056900 Sobic001G075200 Sobic001G075200 Sobic006G062600--Sobic001G075200 Sobic007G068200 Sobic007G068200 Sobic006G062600--Sobic007G068200 Sobic002G147400 Sobic002G147400 Sobic006G062600--Sobic002G147400 Sobic002G066700 Sobic002G066700 Sobic006G062600--Sobic002G066700 Sobic010G207900 Sobic010G207900 Sobic006G062600--Sobic010G207900 Sobic001G075201 Sobic001G075201 Sobic006G062600--Sobic001G075201 Sobic007G086701 Sobic007G086701 Sobic006G062600--Sobic007G086701
Octagon: transcription factors


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