Gene annotation
Transcriptome id Sobic.005G172800.2,Sobic.005G172800.1
Synonym Sb05g023246
Functional annotation expressed protein
UniProt A0A1Z5RJE1 , A0A1Z5RJ69
Pfam PF04780
Panther DB PTHR34465 PTHR34465:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47890 : Ubiquitin carboxyl-terminal hydrolase-related protein
RAP-DB (Rice) LOC_Os11g38620.1,LOC_Os11g38620.2 : expressed protein
MaizeGDB (Corn) Zm00025a029459
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
2 Sobic.006G062600 TUDOR protein with multiple SNc domains, putative, expressed K15979: staphylococcal nuclease domain-containing protein 1
3 Sobic.007G068200 starch synthase III, putative, expressed -
4 Sobic.004G322901 - -
5 Sobic.009G229900 ATROPGEF7/ROPGEF7, putative, expressed -
6 Sobic.010G207900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prenyltransferase, putative, expressed K09833: HPT, HGGT, homogentisate phytyltransferase / homogentisate geranylgeranyltransferase
7 Sobic.007G056900 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
8 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
9 Sobic.007G126000 - -
10 Sobic.006G018751 - -
11 Sobic.002G174500 OsFBX252 - F-box domain containing protein, expressed -
12 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
13 Sobic.002G147466 - -
14 Sobic.007G086701 - -
15 Sobic.002G016800 OsFBD13 - F-box and FBD domain containing protein, expressed -
16 Sobic.001G305100 pectinacetylesterase domain containing protein, expressed -
17 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
18 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
19 Sobic.010G193700 expressed protein -
20 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme


Gene co-expression network
sample Sobic005G172800 Sobic005G172800 Sobic009G056100 Sobic009G056100 Sobic005G172800--Sobic009G056100 Sobic006G062600 Sobic006G062600 Sobic005G172800--Sobic006G062600 Sobic007G068200 Sobic007G068200 Sobic005G172800--Sobic007G068200 Sobic004G322901 Sobic004G322901 Sobic005G172800--Sobic004G322901 Sobic009G229900 Sobic009G229900 Sobic005G172800--Sobic009G229900 Sobic010G207900 Sobic010G207900 Sobic005G172800--Sobic010G207900 Sobic007G056900 Sobic007G056900 Sobic005G172800--Sobic007G056900 Sobic002G230400 Sobic002G230400 Sobic005G172800--Sobic002G230400 Sobic007G126000 Sobic007G126000 Sobic005G172800--Sobic007G126000 Sobic009G056100--Sobic007G126000 Sobic009G056100--Sobic010G207900 Sobic002G358000 Sobic002G358000 Sobic009G056100--Sobic002G358000 Sobic002G286800 Sobic002G286800 Sobic009G056100--Sobic002G286800 Sobic003G099900 Sobic003G099900 Sobic009G056100--Sobic003G099900 Sobic007G131100 Sobic007G131100 Sobic009G056100--Sobic007G131100 Sobic008G082300 Sobic008G082300 Sobic009G056100--Sobic008G082300 Sobic008G188200 Sobic008G188200 Sobic009G056100--Sobic008G188200 Sobic008G064100 Sobic008G064100 Sobic009G056100--Sobic008G064100 Sobic001G392700 Sobic001G392700 Sobic006G062600--Sobic001G392700 Sobic009G056900 Sobic009G056900 Sobic006G062600--Sobic009G056900 Sobic001G075200 Sobic001G075200 Sobic006G062600--Sobic001G075200 Sobic006G062600--Sobic007G068200 Sobic002G147400 Sobic002G147400 Sobic006G062600--Sobic002G147400 Sobic002G066700 Sobic002G066700 Sobic006G062600--Sobic002G066700 Sobic006G062600--Sobic010G207900 Sobic001G075201 Sobic001G075201 Sobic006G062600--Sobic001G075201 Sobic007G086701 Sobic007G086701 Sobic006G062600--Sobic007G086701 Sobic007G068200--Sobic006G062600 Sobic002G016800 Sobic002G016800 Sobic007G068200--Sobic002G016800 Sobic007G068200--Sobic001G075200 Sobic007G080200 Sobic007G080200 Sobic007G068200--Sobic007G080200 Sobic007G068200--Sobic009G056100 Sobic007G068200--Sobic001G392700 Sobic004G163700 Sobic004G163700 Sobic007G068200--Sobic004G163700 Sobic006G018751 Sobic006G018751 Sobic007G068200--Sobic006G018751 Sobic007G068200--Sobic005G172800 Sobic005G083280 Sobic005G083280 Sobic004G322901--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic004G322901--Sobic001G261529 Sobic003G092600 Sobic003G092600 Sobic004G322901--Sobic003G092600 Sobic009G014900 Sobic009G014900 Sobic004G322901--Sobic009G014900 Sobic006G015800 Sobic006G015800 Sobic004G322901--Sobic006G015800 Sobic004G322901--Sobic007G126000 Sobic002G147466 Sobic002G147466 Sobic004G322901--Sobic002G147466 Sobic004G322901--Sobic006G018751 Sobic002G015800 Sobic002G015800 Sobic004G322901--Sobic002G015800 Sobic009G229900--Sobic005G172800 Sobic009G229900--Sobic002G230400 Sobic009G229900--Sobic006G015800 Sobic009G229900--Sobic004G322901 Sobic009G229900--Sobic004G163700 Sobic009G017000 Sobic009G017000 Sobic009G229900--Sobic009G017000 Sobic005G131800 Sobic005G131800 Sobic009G229900--Sobic005G131800 Sobic010G112700 Sobic010G112700 Sobic009G229900--Sobic010G112700 Sobic001G305100 Sobic001G305100 Sobic009G229900--Sobic001G305100 Sobic010G207900--Sobic006G018751 Sobic010G207900--Sobic007G086701 Sobic010G207900--Sobic007G126000 Sobic001G264600 Sobic001G264600 Sobic010G207900--Sobic001G264600 Sobic010G207900--Sobic004G322901 Sobic002G174500 Sobic002G174500 Sobic010G207900--Sobic002G174500 Sobic010G207900--Sobic009G056100 Sobic010G207900--Sobic005G083280 Sobic010G207900--Sobic001G261529 Sobic004G218000 Sobic004G218000 Sobic007G056900--Sobic004G218000 Sobic005G164800 Sobic005G164800 Sobic007G056900--Sobic005G164800 Sobic003G217300 Sobic003G217300 Sobic007G056900--Sobic003G217300 Sobic002G061800 Sobic002G061800 Sobic007G056900--Sobic002G061800 Sobic006G143300 Sobic006G143300 Sobic007G056900--Sobic006G143300 Sobic005G041900 Sobic005G041900 Sobic007G056900--Sobic005G041900 Sobic001G132200 Sobic001G132200 Sobic007G056900--Sobic001G132200 Sobic009G042600 Sobic009G042600 Sobic007G056900--Sobic009G042600 Sobic007G056900--Sobic006G062600 Sobic002G354800 Sobic002G354800 Sobic002G230400--Sobic002G354800 Sobic006G186300 Sobic006G186300 Sobic002G230400--Sobic006G186300 Sobic004G075700 Sobic004G075700 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic002G230400--Sobic004G014100 Sobic002G230400--Sobic004G163700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic007G126000--Sobic010G207900 Sobic007G126000--Sobic006G018751 Sobic007G126000--Sobic004G322901 Sobic007G126000--Sobic009G056100 Sobic007G126000--Sobic005G083280 Sobic007G126000--Sobic002G286800 Sobic007G126000--Sobic007G086701 Sobic009G202200 Sobic009G202200 Sobic007G126000--Sobic009G202200 Sobic001G371600 Sobic001G371600 Sobic007G126000--Sobic001G371600
Octagon: transcription factors


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