Gene annotation
Transcriptome id Sobic.009G229900.1
Synonym ROPGEF8, Sb09g028280, ATROPGEF8
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5YVH8
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT3G24620 : RHO guanyl-nucleotide exchange factor 8
RAP-DB (Rice) LOC_Os05g48640.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a044539 , Zm00025a036591
Brachypodium PNT70723 , PNT70722 , KQK04920
Barley HORVU1Hr1G086590.7 , HORVU1Hr1G086590.6 , HORVU1Hr1G086590.5 , HORVU1Hr1G086590.4 , HORVU1Hr1G086590.3 , HORVU1Hr1G086590.2 , HORVU1Hr1G086590.8 , HORVU3Hr1G073200.1 , HORVU3Hr1G073200.3 , HORVU3Hr1G073200.2 , HORVU3Hr1G073200.5 , HORVU3Hr1G073200.4 , HORVU3Hr1G073200.7 , HORVU3Hr1G073200.6 , HORVU3Hr1G073200.9 , HORVU3Hr1G073200.8
Wheat TraesCS1B02G420200 , TraesCS1A02G392100 , TraesCS1D02G400200 , TraesCS1D02G400200
Populus -


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cDNA sequences
Sobic.009G229900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G172800 expressed protein -
2 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
3 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
4 Sobic.004G322901 - -
5 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
6 Sobic.009G017000 expressed protein -
7 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
8 Sobic.010G112700 NHL repeat-containing protein, putative, expressed -
9 Sobic.001G305100 pectinacetylesterase domain containing protein, expressed -
10 Sobic.001G324800 cysteine proteinase inhibitor 8 precursor, putative, expressed -
11 Sobic.009G056100 splicing factor, arginine/serine-rich, putative, expressed -
12 Sobic.005G172200 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
13 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
14 Sobic.009G116200 PHD finger protein, putative, expressed -
15 Sobic.004G262100 3-hydroxy-3-methylglutaryl-coenzyme A reductase, putative, expressed K00021: hydroxymethylglutaryl-CoA reductase (NADPH)
16 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
17 Sobic.007G068200 starch synthase III, putative, expressed -
18 Sobic.005G083280 - -
19 Sobic.003G092600 seven in absentia protein family protein, expressed -
20 Sobic.007G126000 - -


Gene co-expression network
sample Sobic009G229900 Sobic009G229900 Sobic005G172800 Sobic005G172800 Sobic009G229900--Sobic005G172800 Sobic002G230400 Sobic002G230400 Sobic009G229900--Sobic002G230400 Sobic006G015800 Sobic006G015800 Sobic009G229900--Sobic006G015800 Sobic004G322901 Sobic004G322901 Sobic009G229900--Sobic004G322901 Sobic004G163700 Sobic004G163700 Sobic009G229900--Sobic004G163700 Sobic009G017000 Sobic009G017000 Sobic009G229900--Sobic009G017000 Sobic005G131800 Sobic005G131800 Sobic009G229900--Sobic005G131800 Sobic010G112700 Sobic010G112700 Sobic009G229900--Sobic010G112700 Sobic001G305100 Sobic001G305100 Sobic009G229900--Sobic001G305100 Sobic009G056100 Sobic009G056100 Sobic005G172800--Sobic009G056100 Sobic006G062600 Sobic006G062600 Sobic005G172800--Sobic006G062600 Sobic007G068200 Sobic007G068200 Sobic005G172800--Sobic007G068200 Sobic005G172800--Sobic004G322901 Sobic005G172800--Sobic009G229900 Sobic010G207900 Sobic010G207900 Sobic005G172800--Sobic010G207900 Sobic007G056900 Sobic007G056900 Sobic005G172800--Sobic007G056900 Sobic005G172800--Sobic002G230400 Sobic007G126000 Sobic007G126000 Sobic005G172800--Sobic007G126000 Sobic002G354800 Sobic002G354800 Sobic002G230400--Sobic002G354800 Sobic006G186300 Sobic006G186300 Sobic002G230400--Sobic006G186300 Sobic004G075700 Sobic004G075700 Sobic002G230400--Sobic004G075700 Sobic006G143300 Sobic006G143300 Sobic002G230400--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic002G230400--Sobic004G014100 Sobic002G230400--Sobic004G163700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic003G092600 Sobic003G092600 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic006G015800--Sobic004G322901 Sobic001G371600 Sobic001G371600 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic005G083280 Sobic005G083280 Sobic004G322901--Sobic005G083280 Sobic001G261529 Sobic001G261529 Sobic004G322901--Sobic001G261529 Sobic004G322901--Sobic003G092600 Sobic009G014900 Sobic009G014900 Sobic004G322901--Sobic009G014900 Sobic004G322901--Sobic006G015800 Sobic004G322901--Sobic007G126000 Sobic002G147466 Sobic002G147466 Sobic004G322901--Sobic002G147466 Sobic006G018751 Sobic006G018751 Sobic004G322901--Sobic006G018751 Sobic002G015800 Sobic002G015800 Sobic004G322901--Sobic002G015800 Sobic001G194100 Sobic001G194100 Sobic004G163700--Sobic001G194100 Sobic004G163700--Sobic006G015800 Sobic004G262100 Sobic004G262100 Sobic004G163700--Sobic004G262100 Sobic001G425900 Sobic001G425900 Sobic004G163700--Sobic001G425900 Sobic006G046300 Sobic006G046300 Sobic004G163700--Sobic006G046300 Sobic007G041200 Sobic007G041200 Sobic004G163700--Sobic007G041200 Sobic004G163700--Sobic003G092600 Sobic004G163700--Sobic010G273800 Sobic001G083900 Sobic001G083900 Sobic004G163700--Sobic001G083900 Sobic003G214650 Sobic003G214650 Sobic009G017000--Sobic003G214650 Sobic009G017000--Sobic006G186300 Sobic006G261200 Sobic006G261200 Sobic009G017000--Sobic006G261200 Sobic009G017000--Sobic006G015800 Sobic009G017000--Sobic007G041200 Sobic008G037100 Sobic008G037100 Sobic009G017000--Sobic008G037100 Sobic010G118200 Sobic010G118200 Sobic009G017000--Sobic010G118200 Sobic001G150300 Sobic001G150300 Sobic009G017000--Sobic001G150300 Sobic009G168300 Sobic009G168300 Sobic009G017000--Sobic009G168300 Sobic006G161300 Sobic006G161300 Sobic005G131800--Sobic006G161300 Sobic005G131800--Sobic010G112700 Sobic005G131800--Sobic001G305100 Sobic005G131800--Sobic006G186300 Sobic002G286800 Sobic002G286800 Sobic005G131800--Sobic002G286800 Sobic005G131800--Sobic004G075700 Sobic001G183100 Sobic001G183100 Sobic005G131800--Sobic001G183100 Sobic006G040101 Sobic006G040101 Sobic005G131800--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G131800--Sobic007G025100 Sobic010G112700--Sobic005G131800 Sobic010G112700--Sobic002G230400 Sobic008G156200 Sobic008G156200 Sobic010G112700--Sobic008G156200 Sobic001G541400 Sobic001G541400 Sobic010G112700--Sobic001G541400 Sobic010G112700--Sobic006G186300 Sobic006G144500 Sobic006G144500 Sobic010G112700--Sobic006G144500 Sobic008G116100 Sobic008G116100 Sobic010G112700--Sobic008G116100 Sobic010G112700--Sobic004G075700 Sobic010G112700--Sobic007G041200 Sobic001G305100--Sobic002G172200 Sobic003G266100 Sobic003G266100 Sobic001G305100--Sobic003G266100 Sobic001G305100--Sobic005G082300 Sobic002G059500 Sobic002G059500 Sobic001G305100--Sobic002G059500 Sobic001G511400 Sobic001G511400 Sobic001G305100--Sobic001G511400 Sobic002G300900 Sobic002G300900 Sobic001G305100--Sobic002G300900 Sobic001G305100--Sobic006G040101 Sobic002G172100 Sobic002G172100 Sobic001G305100--Sobic002G172100 Sobic005G147500 Sobic005G147500 Sobic001G305100--Sobic005G147500
Octagon: transcription factors


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