Gene annotation
Transcriptome id Sobic.005G131800.4,Sobic.005G131800.3,Sobic.005G131800.1,Sobic.005G131800.2
Synonym RNA_POL_II_LSRNA_POL_II_LS, RPB1, Sb05g019520, NRPB1, RNA_POL_II_LS
Functional annotation DNA-directed RNA polymerase III subunit RPC1, putative, expressed
UniProt C5Y387 , H0I4A3 , A0A1Z5RIP6 , A0A1Z5RIH1 , A0A109ND99 , C5Y385 , A1E9R5
Pfam PF05000 PF04983 PF04990 PF04992 PF00623 PF04998 PF04997
Panther DB PTHR19376 PTHR19376:SF37
NCBI CDD -
KEGG Orthology K03006; RPB1, DNA-directed RNA polymerase II subunit RPB1
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT4G35800 : RNA polymerase II large subunit
RAP-DB (Rice) LOC_Os05g05860.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a055172
Brachypodium KQK11890 , KQJ95346
Barley HORVU2Hr1G054210.1 , HORVU2Hr1G054210.2 , HORVU2Hr1G054210.30 , HORVU2Hr1G054210.31 , HORVU2Hr1G054210.8 , HORVU2Hr1G054210.9 , HORVU2Hr1G054210.3 , HORVU5Hr1G117770.8 , HORVU5Hr1G117770.9 , HORVU5Hr1G117770.6 , HORVU5Hr1G117770.7 , HORVU5Hr1G117770.4 , HORVU5Hr1G117770.2 , HORVU5Hr1G117770.3 , HORVU2Hr1G126750.3 , HORVU2Hr1G126750.2 , HORVU2Hr1G126750.1 , HORVU2Hr1G126750.5 , HORVU2Hr1G126750.4 , HORVU5Hr1G114400.9 , HORVU5Hr1G114400.8 , HORVU5Hr1G114400.1 , HORVU5Hr1G114400.3 , HORVU5Hr1G114400.2 , HORVU5Hr1G114400.5 , HORVU5Hr1G114400.4 , HORVU5Hr1G114400.7 , HORVU5Hr1G114400.6 , HORVU2Hr1G054210.29 , HORVU2Hr1G054210.23 , HORVU5Hr1G114350.1 , HORVU2Hr1G054210.12 , HORVU2Hr1G054210.13 , HORVU2Hr1G054210.11 , HORVU2Hr1G054210.16 , HORVU2Hr1G054210.18 , HORVU5Hr1G114340.2 , HORVU5Hr1G114340.1 , HORVU5Hr1G114400.14 , HORVU5Hr1G114400.17 , HORVU5Hr1G114400.16 , HORVU2Hr1G054210.22 , HORVU5Hr1G117770.15 , HORVU5Hr1G114400.18 , HORVU5Hr1G114400.15 , HORVU5Hr1G114400.11 , HORVU5Hr1G114400.10 , HORVU5Hr1G114400.13 , HORVU5Hr1G114400.12 , HORVU7Hr1G037130.3 , HORVU7Hr1G037130.2 , HORVU7Hr1G037130.1 , HORVU5Hr1G117770.11 , HORVU5Hr1G117770.14 , HORVU5Hr1G117770.16 , HORVU5Hr1G117770.17 , HORVU5Hr1G117770.12 , HORVU5Hr1G117770.13
Wheat TraesCS7B02G202000 , TraesCS5D02G499000 , TraesCS7B02G202000 , TraesCS2D02G427500 , TraesCS2D02G427500 , TraesCS7A02G301900 , TraesCS7D02G297100 , TraesCS2B02G622300 , TraesCS7D02G182500 , TraesCS5B02G498800 , TraesCS2A02G558100 , TraesCS5D02G515800 , TraesCS7A02G180700 , TraesCS5B02G499000 , TraesCS5B02G498800 , TraesCS2D02G571500 , TraesCS5B02G498800 , TraesCS7B02G085700 , TraesCS5D02G498900 , TraesCS5B02G515600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
2 Sobic.010G112700 NHL repeat-containing protein, putative, expressed -
3 Sobic.001G305100 pectinacetylesterase domain containing protein, expressed -
4 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
5 Sobic.002G286800 MATE efflux protein, putative, expressed -
6 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
7 Sobic.001G183100 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
8 Sobic.006G040101 - -
9 Sobic.007G025100 expressed protein -
10 Sobic.002G300900 - -
11 Sobic.005G035500 expressed protein -
12 Sobic.002G059500 OsFBX237 - F-box domain containing protein, expressed -
13 Sobic.006G144500 Protein eceriferum 1 CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
14 Sobic.007G199500 MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.003G026900 expressed protein -
16 Sobic.007G131100 jmjC domain containing protein, expressed K15601: [histone H3]-dimethyl-L-lysine9 demethylase
17 Sobic.001G297700 expressed protein -
18 Sobic.002G172200 receptor-like protein kinase 5 precursor, putative, expressed -
19 Sobic.006G004100 no apical meristem protein, putative, expressed -
20 Sobic.010G047300 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic005G131800 Sobic005G131800 Sobic006G161300 Sobic006G161300 Sobic005G131800--Sobic006G161300 Sobic010G112700 Sobic010G112700 Sobic005G131800--Sobic010G112700 Sobic001G305100 Sobic001G305100 Sobic005G131800--Sobic001G305100 Sobic006G186300 Sobic006G186300 Sobic005G131800--Sobic006G186300 Sobic002G286800 Sobic002G286800 Sobic005G131800--Sobic002G286800 Sobic004G075700 Sobic004G075700 Sobic005G131800--Sobic004G075700 Sobic001G183100 Sobic001G183100 Sobic005G131800--Sobic001G183100 Sobic006G040101 Sobic006G040101 Sobic005G131800--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G131800--Sobic007G025100 Sobic005G035500 Sobic005G035500 Sobic006G161300--Sobic005G035500 Sobic002G217000 Sobic002G217000 Sobic006G161300--Sobic002G217000 Sobic002G058900 Sobic002G058900 Sobic006G161300--Sobic002G058900 Sobic002G059500 Sobic002G059500 Sobic006G161300--Sobic002G059500 Sobic006G004100 Sobic006G004100 Sobic006G161300--Sobic006G004100 Sobic006G161300--Sobic006G040101 Sobic002G101200 Sobic002G101200 Sobic006G161300--Sobic002G101200 Sobic008G159300 Sobic008G159300 Sobic006G161300--Sobic008G159300 Sobic003G266100 Sobic003G266100 Sobic006G161300--Sobic003G266100 Sobic010G112700--Sobic005G131800 Sobic002G230400 Sobic002G230400 Sobic010G112700--Sobic002G230400 Sobic008G156200 Sobic008G156200 Sobic010G112700--Sobic008G156200 Sobic001G541400 Sobic001G541400 Sobic010G112700--Sobic001G541400 Sobic010G112700--Sobic006G186300 Sobic006G144500 Sobic006G144500 Sobic010G112700--Sobic006G144500 Sobic008G116100 Sobic008G116100 Sobic010G112700--Sobic008G116100 Sobic010G112700--Sobic004G075700 Sobic007G041200 Sobic007G041200 Sobic010G112700--Sobic007G041200 Sobic002G172200 Sobic002G172200 Sobic001G305100--Sobic002G172200 Sobic001G305100--Sobic003G266100 Sobic005G082300 Sobic005G082300 Sobic001G305100--Sobic005G082300 Sobic001G305100--Sobic002G059500 Sobic001G511400 Sobic001G511400 Sobic001G305100--Sobic001G511400 Sobic002G300900 Sobic002G300900 Sobic001G305100--Sobic002G300900 Sobic001G305100--Sobic006G040101 Sobic002G172100 Sobic002G172100 Sobic001G305100--Sobic002G172100 Sobic005G147500 Sobic005G147500 Sobic001G305100--Sobic005G147500 Sobic010G047300 Sobic010G047300 Sobic006G186300--Sobic010G047300 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic006G186300--Sobic001G305100 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800 Sobic010G035000 Sobic010G035000 Sobic002G286800--Sobic010G035000 Sobic007G199500 Sobic007G199500 Sobic002G286800--Sobic007G199500 Sobic001G297700 Sobic001G297700 Sobic002G286800--Sobic001G297700 Sobic007G131100 Sobic007G131100 Sobic002G286800--Sobic007G131100 Sobic006G105300 Sobic006G105300 Sobic002G286800--Sobic006G105300 Sobic005G184500 Sobic005G184500 Sobic002G286800--Sobic005G184500 Sobic005G185400 Sobic005G185400 Sobic002G286800--Sobic005G185400 Sobic005G184400 Sobic005G184400 Sobic002G286800--Sobic005G184400 Sobic002G286800--Sobic007G025100 Sobic004G075700--Sobic006G186300 Sobic010G207400 Sobic010G207400 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic003G026900 Sobic003G026900 Sobic004G075700--Sobic003G026900 Sobic006G061100 Sobic006G061100 Sobic004G075700--Sobic006G061100 Sobic004G075700--Sobic006G161300 Sobic004G075700--Sobic005G131800 Sobic008G184000 Sobic008G184000 Sobic001G183100--Sobic008G184000 Sobic005G227151 Sobic005G227151 Sobic001G183100--Sobic005G227151 Sobic002G105900 Sobic002G105900 Sobic001G183100--Sobic002G105900 Sobic004G207500 Sobic004G207500 Sobic001G183100--Sobic004G207500 Sobic004G029700 Sobic004G029700 Sobic001G183100--Sobic004G029700 Sobic008G184500 Sobic008G184500 Sobic001G183100--Sobic008G184500 Sobic003G326300 Sobic003G326300 Sobic001G183100--Sobic003G326300 Sobic003G099900 Sobic003G099900 Sobic001G183100--Sobic003G099900 Sobic002G273000 Sobic002G273000 Sobic001G183100--Sobic002G273000 Sobic006G040101--Sobic002G059500 Sobic006G040101--Sobic002G300900 Sobic006G040101--Sobic007G025100 Sobic006G040101--Sobic005G035500 Sobic006G040101--Sobic003G266100 Sobic006G040101--Sobic001G297700 Sobic006G040101--Sobic001G511400 Sobic006G040101--Sobic002G172200 Sobic006G040101--Sobic006G004100 Sobic007G025100--Sobic002G300900 Sobic007G025100--Sobic007G131100 Sobic007G025100--Sobic001G297700 Sobic007G025100--Sobic006G040101 Sobic007G025100--Sobic010G035000 Sobic007G025100--Sobic002G059500 Sobic007G025100--Sobic005G035500 Sobic007G025100--Sobic006G105300 Sobic008G082300 Sobic008G082300 Sobic007G025100--Sobic008G082300
Octagon: transcription factors


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