Gene annotation
Transcriptome id Sobic.010G112700.1
Synonym Sb10g009760
Functional annotation NHL repeat-containing protein, putative, expressed
UniProt C5Z8F9
Pfam -
Panther DB PTHR13833 PTHR13833:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G70280 : NHL domain-containing protein
RAP-DB (Rice) LOC_Os06g15820.1 : NHL repeat-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a050427 , Zm00025a042684 , Zm00025a021910 , Zm00025a032639
Brachypodium PNT76073 , KQK01613
Barley HORVU6Hr1G072950.9 , HORVU6Hr1G072950.8 , HORVU6Hr1G072950.3 , HORVU6Hr1G072950.2 , HORVU6Hr1G072950.1 , HORVU6Hr1G072950.7 , HORVU6Hr1G072950.6 , HORVU7Hr1G042740.14 , HORVU7Hr1G042740.15 , HORVU7Hr1G042740.12 , HORVU7Hr1G042740.13 , HORVU7Hr1G042740.10 , HORVU7Hr1G042740.11 , HORVU6Hr1G072950.13 , HORVU6Hr1G072950.12 , HORVU6Hr1G072950.11 , HORVU6Hr1G072950.10 , HORVU6Hr1G072950.14 , HORVU7Hr1G042740.4 , HORVU7Hr1G042740.5 , HORVU7Hr1G042740.6 , HORVU7Hr1G042740.7 , HORVU7Hr1G042740.2 , HORVU7Hr1G042740.3 , HORVU7Hr1G042740.8 , HORVU7Hr1G042740.9
Wheat TraesCS6B02G322100 , TraesCS7B02G116500 , TraesCS7A02G209600 , TraesCS7A02G209600 , TraesCS7A02G209600 , TraesCS6D02G272900 , TraesCS6D02G272900 , TraesCS6A02G291600 , TraesCS6A02G291600 , TraesCS7D02G211500
Populus -


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cDNA sequences
Sobic.010G112700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
2 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
3 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
4 Sobic.001G541400 LTPL112 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
5 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
6 Sobic.006G144500 Protein eceriferum 1 CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
7 Sobic.008G116100 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase,chloroplast precursor, putative, expressed K13832: aroDE, 3-dehydroquinate dehydratase / shikimate dehydrogenase
8 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
9 Sobic.007G041200 cytochrome P450, putative, expressed -
10 Sobic.009G116200 PHD finger protein, putative, expressed -
11 Sobic.004G163700 "1,4-alpha-glucan-branching enzyme 2"(PubMedID : 26186930)@"1,4-alpha-glucan branching enzyme IIB (Zm)"(PubMedID : 27208977)@Starch synthesis(PubMedID : 31624872)@"SbeIIb(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659883)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
12 Sobic.002G343000 expressed protein -
13 Sobic.001G305100 pectinacetylesterase domain containing protein, expressed -
14 Sobic.003G026900 expressed protein -
15 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
16 Sobic.002G286800 MATE efflux protein, putative, expressed -
17 Sobic.005G176875 - -
18 Sobic.009G017000 expressed protein -
19 Sobic.010G195301 - -
20 Sobic.004G286250 - -


Gene co-expression network
sample Sobic010G112700 Sobic010G112700 Sobic005G131800 Sobic005G131800 Sobic010G112700--Sobic005G131800 Sobic002G230400 Sobic002G230400 Sobic010G112700--Sobic002G230400 Sobic008G156200 Sobic008G156200 Sobic010G112700--Sobic008G156200 Sobic001G541400 Sobic001G541400 Sobic010G112700--Sobic001G541400 Sobic006G186300 Sobic006G186300 Sobic010G112700--Sobic006G186300 Sobic006G144500 Sobic006G144500 Sobic010G112700--Sobic006G144500 Sobic008G116100 Sobic008G116100 Sobic010G112700--Sobic008G116100 Sobic004G075700 Sobic004G075700 Sobic010G112700--Sobic004G075700 Sobic007G041200 Sobic007G041200 Sobic010G112700--Sobic007G041200 Sobic006G161300 Sobic006G161300 Sobic005G131800--Sobic006G161300 Sobic005G131800--Sobic010G112700 Sobic001G305100 Sobic001G305100 Sobic005G131800--Sobic001G305100 Sobic005G131800--Sobic006G186300 Sobic002G286800 Sobic002G286800 Sobic005G131800--Sobic002G286800 Sobic005G131800--Sobic004G075700 Sobic001G183100 Sobic001G183100 Sobic005G131800--Sobic001G183100 Sobic006G040101 Sobic006G040101 Sobic005G131800--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G131800--Sobic007G025100 Sobic002G354800 Sobic002G354800 Sobic002G230400--Sobic002G354800 Sobic002G230400--Sobic006G186300 Sobic002G230400--Sobic004G075700 Sobic006G143300 Sobic006G143300 Sobic002G230400--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic002G230400--Sobic010G112700 Sobic002G343000 Sobic002G343000 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic010G207400 Sobic010G207400 Sobic008G156200--Sobic010G207400 Sobic002G247300 Sobic002G247300 Sobic008G156200--Sobic002G247300 Sobic003G035500 Sobic003G035500 Sobic008G156200--Sobic003G035500 Sobic008G156200--Sobic004G075700 Sobic008G156200--Sobic005G131800 Sobic003G412200 Sobic003G412200 Sobic008G156200--Sobic003G412200 Sobic008G156200--Sobic010G112700 Sobic002G016900 Sobic002G016900 Sobic008G156200--Sobic002G016900 Sobic004G038900 Sobic004G038900 Sobic008G156200--Sobic004G038900 Sobic002G197800 Sobic002G197800 Sobic001G541400--Sobic002G197800 Sobic002G273000 Sobic002G273000 Sobic001G541400--Sobic002G273000 Sobic010G195450 Sobic010G195450 Sobic001G541400--Sobic010G195450 Sobic010G195301 Sobic010G195301 Sobic001G541400--Sobic010G195301 Sobic001G085200 Sobic001G085200 Sobic001G541400--Sobic001G085200 Sobic009G201100 Sobic009G201100 Sobic001G541400--Sobic009G201100 Sobic005G176875 Sobic005G176875 Sobic001G541400--Sobic005G176875 Sobic002G066000 Sobic002G066000 Sobic001G541400--Sobic002G066000 Sobic004G286301 Sobic004G286301 Sobic001G541400--Sobic004G286301 Sobic010G047300 Sobic010G047300 Sobic006G186300--Sobic010G047300 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic006G186300--Sobic001G305100 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800 Sobic006G144500--Sobic005G131800 Sobic006G144500--Sobic001G305100 Sobic005G205800 Sobic005G205800 Sobic006G144500--Sobic005G205800 Sobic006G144500--Sobic010G112700 Sobic006G144500--Sobic006G040101 Sobic006G144500--Sobic007G025100 Sobic002G300900 Sobic002G300900 Sobic006G144500--Sobic002G300900 Sobic006G144500--Sobic002G066000 Sobic010G035000 Sobic010G035000 Sobic006G144500--Sobic010G035000 Sobic008G116100--Sobic007G041200 Sobic009G033500 Sobic009G033500 Sobic008G116100--Sobic009G033500 Sobic008G116100--Sobic010G084800 Sobic002G097601 Sobic002G097601 Sobic008G116100--Sobic002G097601 Sobic004G210000 Sobic004G210000 Sobic008G116100--Sobic004G210000 Sobic008G116100--Sobic005G176875 Sobic004G339900 Sobic004G339900 Sobic008G116100--Sobic004G339900 Sobic008G116100--Sobic006G186300 Sobic008G116100--Sobic010G047300 Sobic004G075700--Sobic006G186300 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic003G026900 Sobic003G026900 Sobic004G075700--Sobic003G026900 Sobic006G061100 Sobic006G061100 Sobic004G075700--Sobic006G061100 Sobic004G075700--Sobic006G161300 Sobic004G075700--Sobic005G131800 Sobic007G041200--Sobic008G116100 Sobic007G041200--Sobic009G033500 Sobic007G041200--Sobic010G084800 Sobic007G041200--Sobic010G047300 Sobic007G041200--Sobic002G097601 Sobic007G041200--Sobic006G186300 Sobic007G091200 Sobic007G091200 Sobic007G041200--Sobic007G091200 Sobic008G109600 Sobic008G109600 Sobic007G041200--Sobic008G109600 Sobic010G060100 Sobic010G060100 Sobic007G041200--Sobic010G060100
Octagon: transcription factors


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