Gene annotation
Transcriptome id Sobic.004G075700.1,Sobic.004G075700.2
Synonym ATMBD9, MBD9, Sb04g006240
Functional annotation PHD-finger domain containing protein, putative, expressed
UniProt C5XXD1 , A0A194YN86
Pfam PF15612 PF00628
Panther DB PTHR14140 PTHR14140:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G01460 : methyl-CPG-binding domain 9
RAP-DB (Rice) LOC_Os02g09920.1 : PHD-finger domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a034691
Brachypodium KQJ93788
Barley HORVU5Hr1G123350.2 , HORVU5Hr1G123350.6 , HORVU5Hr1G123390.3 , HORVU5Hr1G123390.2 , HORVU5Hr1G123350.3 , HORVU5Hr1G123350.7 , HORVU5Hr1G123350.4 , HORVU6Hr1G034680.9 , HORVU6Hr1G034680.8 , HORVU6Hr1G034680.3 , HORVU6Hr1G034680.2 , HORVU6Hr1G034680.5 , HORVU6Hr1G034680.4 , HORVU6Hr1G034680.7 , HORVU6Hr1G034680.6 , HORVU6Hr1G034680.14 , HORVU6Hr1G034680.11 , HORVU6Hr1G034680.10
Wheat TraesCS6A02G169600 , TraesCS6D02G159400 , TraesCS6B02G197500
Populus -


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cDNA sequences
Sobic.004G075700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G186300 fasciclin-like arabinogalactan protein, putative, expressed -
2 Sobic.010G207400 protein kinase domain containing protein, expressed -
3 Sobic.006G015800 "1,4-alpha-glucan branching enzyme/starch branching enzyme II, PULLULANASE 1, CHLOROPLASTIC"(PubMedID : 21853065)@Alpha amylase, catalytic domain containing protein, expressed -
4 Sobic.001G305100 pectinacetylesterase domain containing protein, expressed -
5 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase
6 Sobic.003G026900 expressed protein -
7 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
8 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
9 Sobic.005G131800 DNA-directed RNA polymerase III subunit RPC1, putative, expressed K03006: RPB1, DNA-directed RNA polymerase II subunit RPB1
10 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
11 Sobic.005G171800 OsFBDUF20 - F-box and DUF domain containing protein, expressed -
12 Sobic.010G047300 GDSL-like lipase/acylhydrolase, putative, expressed -
13 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
14 Sobic.002G172200 receptor-like protein kinase 5 precursor, putative, expressed -
15 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
16 Sobic.008G109600 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
17 Sobic.002G172100 receptor-like protein kinase 5 precursor, putative, expressed -
18 Sobic.003G266100 ESP4, putative, expressed K06100: symplekin
19 Sobic.004G038900 expressed protein -
20 Sobic.005G082300 - -


Gene co-expression network
sample Sobic004G075700 Sobic004G075700 Sobic006G186300 Sobic006G186300 Sobic004G075700--Sobic006G186300 Sobic010G207400 Sobic010G207400 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic001G305100 Sobic001G305100 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic003G026900 Sobic003G026900 Sobic004G075700--Sobic003G026900 Sobic006G061100 Sobic006G061100 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic005G131800 Sobic005G131800 Sobic004G075700--Sobic005G131800 Sobic010G047300 Sobic010G047300 Sobic006G186300--Sobic010G047300 Sobic007G041200 Sobic007G041200 Sobic006G186300--Sobic007G041200 Sobic002G122000 Sobic002G122000 Sobic006G186300--Sobic002G122000 Sobic006G186300--Sobic004G075700 Sobic002G230400 Sobic002G230400 Sobic006G186300--Sobic002G230400 Sobic010G084800 Sobic010G084800 Sobic006G186300--Sobic010G084800 Sobic006G186300--Sobic001G305100 Sobic006G186300--Sobic005G131800 Sobic005G171800 Sobic005G171800 Sobic006G186300--Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic003G092600 Sobic003G092600 Sobic006G015800--Sobic003G092600 Sobic004G212350 Sobic004G212350 Sobic006G015800--Sobic004G212350 Sobic005G082300 Sobic005G082300 Sobic006G015800--Sobic005G082300 Sobic002G172200 Sobic002G172200 Sobic006G015800--Sobic002G172200 Sobic002G100000 Sobic002G100000 Sobic006G015800--Sobic002G100000 Sobic004G322901 Sobic004G322901 Sobic006G015800--Sobic004G322901 Sobic001G371600 Sobic001G371600 Sobic006G015800--Sobic001G371600 Sobic005G032500 Sobic005G032500 Sobic006G015800--Sobic005G032500 Sobic001G489075 Sobic001G489075 Sobic006G015800--Sobic001G489075 Sobic001G305100--Sobic002G172200 Sobic003G266100 Sobic003G266100 Sobic001G305100--Sobic003G266100 Sobic001G305100--Sobic005G082300 Sobic002G059500 Sobic002G059500 Sobic001G305100--Sobic002G059500 Sobic001G511400 Sobic001G511400 Sobic001G305100--Sobic001G511400 Sobic002G300900 Sobic002G300900 Sobic001G305100--Sobic002G300900 Sobic006G040101 Sobic006G040101 Sobic001G305100--Sobic006G040101 Sobic002G172100 Sobic002G172100 Sobic001G305100--Sobic002G172100 Sobic005G147500 Sobic005G147500 Sobic001G305100--Sobic005G147500 Sobic001G278700--Sobic004G075700 Sobic001G278700--Sobic006G015800 Sobic010G273800 Sobic010G273800 Sobic001G278700--Sobic010G273800 Sobic002G354800 Sobic002G354800 Sobic001G278700--Sobic002G354800 Sobic007G150700 Sobic007G150700 Sobic001G278700--Sobic007G150700 Sobic001G278700--Sobic002G230400 Sobic003G055200 Sobic003G055200 Sobic001G278700--Sobic003G055200 Sobic004G163700 Sobic004G163700 Sobic001G278700--Sobic004G163700 Sobic001G278700--Sobic006G161300 Sobic003G026900--Sobic004G075700 Sobic003G026900--Sobic005G131800 Sobic009G132650 Sobic009G132650 Sobic003G026900--Sobic009G132650 Sobic001G067000 Sobic001G067000 Sobic003G026900--Sobic001G067000 Sobic003G026900--Sobic006G186300 Sobic003G026900--Sobic006G061100 Sobic003G026900--Sobic002G230400 Sobic003G026900--Sobic006G161300 Sobic005G176875 Sobic005G176875 Sobic003G026900--Sobic005G176875 Sobic006G061100--Sobic004G075700 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic009G113100 Sobic009G113100 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic006G061100--Sobic009G132650 Sobic005G035500 Sobic005G035500 Sobic006G161300--Sobic005G035500 Sobic002G217000 Sobic002G217000 Sobic006G161300--Sobic002G217000 Sobic002G058900 Sobic002G058900 Sobic006G161300--Sobic002G058900 Sobic006G161300--Sobic002G059500 Sobic006G004100 Sobic006G004100 Sobic006G161300--Sobic006G004100 Sobic006G161300--Sobic006G040101 Sobic002G101200 Sobic002G101200 Sobic006G161300--Sobic002G101200 Sobic008G159300 Sobic008G159300 Sobic006G161300--Sobic008G159300 Sobic006G161300--Sobic003G266100 Sobic005G131800--Sobic006G161300 Sobic010G112700 Sobic010G112700 Sobic005G131800--Sobic010G112700 Sobic005G131800--Sobic001G305100 Sobic005G131800--Sobic006G186300 Sobic002G286800 Sobic002G286800 Sobic005G131800--Sobic002G286800 Sobic005G131800--Sobic004G075700 Sobic001G183100 Sobic001G183100 Sobic005G131800--Sobic001G183100 Sobic005G131800--Sobic006G040101 Sobic007G025100 Sobic007G025100 Sobic005G131800--Sobic007G025100
Octagon: transcription factors


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