Gene annotation
Transcriptome id Sobic.006G061100.2,Sobic.006G061100.1,Sobic.006G061100.3
Synonym SNF4, ATSNF4, Sb06g014920
Functional annotation CBS domain containing membrane protein, putative, expressed
UniProt A0A1B6PKI2 , A0A1Z5RDD0 , A0A1B6PKH0
Pfam PF00571 PF16561 PF16561 PF00571
Panther DB PTHR13780 PTHR13780:SF35
NCBI CDD KOG1764; 5'-AMP-activated protein kinase, gamma subunit
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09020 : homolog of yeast sucrose nonfermenting 4
RAP-DB (Rice) LOC_Os04g32880.2,LOC_Os04g32880.1 : CBS domain containing membrane protein, putative, expressed
MaizeGDB (Corn) Zm00025a011005 , Zm00025a023035 , Zm00025a011629 , Zm00025a006542 , Zm00025a055963 , Zm00025a038429
Brachypodium KQJ82344 , KQJ82343 , KQJ82342 , KQJ82341 , PNT60944
Barley HORVU2Hr1G071540.15 , HORVU2Hr1G071540.14 , HORVU2Hr1G071540.17 , HORVU2Hr1G071540.16 , HORVU2Hr1G071540.11 , HORVU2Hr1G071540.10 , HORVU2Hr1G071540.13 , HORVU2Hr1G071540.12 , HORVU2Hr1G071540.1 , HORVU2Hr1G071540.3 , HORVU2Hr1G071540.2 , HORVU2Hr1G071540.5 , HORVU2Hr1G071540.4 , HORVU2Hr1G071540.7 , HORVU2Hr1G071540.6 , HORVU2Hr1G071540.9 , HORVU2Hr1G071540.8
Wheat TraesCS2B02G305800 , TraesCS2B02G305800 , TraesCS2B02G305800 , TraesCS2B02G305800 , TraesCS2B02G305800 , TraesCS2B02G305800 , TraesCS2B02G305800 , TraesCS2A02G289200 , TraesCS2A02G289200 , TraesCS2A02G289200 , TraesCS2A02G289200 , TraesCS2D02G287200 , TraesCS2D02G287200 , TraesCS2D02G287200 , TraesCS2D02G287200
Populus -


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cDNA sequences
Sobic.006G061100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
2 Sobic.003G026900 expressed protein -
3 Sobic.009G060300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
4 Sobic.010G207400 protein kinase domain containing protein, expressed -
5 Sobic.006G015500 ZOS9-03 - C2H2 zinc finger protein, expressed -
6 Sobic.004G154300 ThiF family domain containing protein, putative, expressed K12164: UBA5, ubiquitin-like modifier-activating enzyme 5
7 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
8 Sobic.004G311400 PHD-finger domain containing protein, putative, expressed -
9 Sobic.009G132650 - -
10 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
11 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.002G029100 GYF domain containing protein, putative, expressed -
13 Sobic.002G286800 MATE efflux protein, putative, expressed -
14 Sobic.006G161300 vacuolar-processing enzyme precursor, putative, expressed K01369: legumain
15 Sobic.002G390400 expressed protein -
16 Sobic.005G074400 OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed K09580: PDIA1, protein disulfide-isomerase A1
17 Sobic.001G123201 - -
18 Sobic.008G156200 zinc finger family protein, putative, expressed K16277: E3 ubiquitin-protein ligase DRIP
19 Sobic.001G423300 outer membrane protein, OMP85 family, putative, expressed -
20 Sobic.001G278700 Inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed K00913: inositol-1,3,4-trisphosphate 5/6-kinase / inositol-tetrakisphosphate 1-kinase


Gene co-expression network
sample Sobic006G061100 Sobic006G061100 Sobic004G075700 Sobic004G075700 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic010G207400 Sobic010G207400 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic009G113100 Sobic009G113100 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic006G186300 Sobic006G186300 Sobic004G075700--Sobic006G186300 Sobic004G075700--Sobic010G207400 Sobic006G015800 Sobic006G015800 Sobic004G075700--Sobic006G015800 Sobic001G305100 Sobic001G305100 Sobic004G075700--Sobic001G305100 Sobic001G278700 Sobic001G278700 Sobic004G075700--Sobic001G278700 Sobic004G075700--Sobic003G026900 Sobic004G075700--Sobic006G061100 Sobic006G161300 Sobic006G161300 Sobic004G075700--Sobic006G161300 Sobic005G131800 Sobic005G131800 Sobic004G075700--Sobic005G131800 Sobic003G026900--Sobic004G075700 Sobic003G026900--Sobic005G131800 Sobic003G026900--Sobic009G132650 Sobic001G067000 Sobic001G067000 Sobic003G026900--Sobic001G067000 Sobic003G026900--Sobic006G186300 Sobic003G026900--Sobic006G061100 Sobic002G230400 Sobic002G230400 Sobic003G026900--Sobic002G230400 Sobic003G026900--Sobic006G161300 Sobic005G176875 Sobic005G176875 Sobic003G026900--Sobic005G176875 Sobic009G060300--Sobic009G132650 Sobic004G071100 Sobic004G071100 Sobic009G060300--Sobic004G071100 Sobic005G033400 Sobic005G033400 Sobic009G060300--Sobic005G033400 Sobic004G029800 Sobic004G029800 Sobic009G060300--Sobic004G029800 Sobic002G286800 Sobic002G286800 Sobic009G060300--Sobic002G286800 Sobic006G081400 Sobic006G081400 Sobic009G060300--Sobic006G081400 Sobic005G185400 Sobic005G185400 Sobic009G060300--Sobic005G185400 Sobic005G184500 Sobic005G184500 Sobic009G060300--Sobic005G184500 Sobic005G188800 Sobic005G188800 Sobic009G060300--Sobic005G188800 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic006G015500--Sobic006G061100 Sobic006G015500--Sobic004G075700 Sobic008G164700 Sobic008G164700 Sobic006G015500--Sobic008G164700 Sobic006G179400 Sobic006G179400 Sobic006G015500--Sobic006G179400 Sobic006G015500--Sobic001G278700 Sobic009G132600 Sobic009G132600 Sobic006G015500--Sobic009G132600 Sobic006G015500--Sobic009G060300 Sobic006G015500--Sobic009G113100 Sobic006G257600 Sobic006G257600 Sobic006G015500--Sobic006G257600 Sobic004G154300--Sobic006G061100 Sobic004G282100 Sobic004G282100 Sobic004G154300--Sobic004G282100 Sobic003G150900 Sobic003G150900 Sobic004G154300--Sobic003G150900 Sobic006G141600 Sobic006G141600 Sobic004G154300--Sobic006G141600 Sobic001G168900 Sobic001G168900 Sobic004G154300--Sobic001G168900 Sobic002G292900 Sobic002G292900 Sobic004G154300--Sobic002G292900 Sobic001G458200 Sobic001G458200 Sobic004G154300--Sobic001G458200 Sobic002G029100 Sobic002G029100 Sobic004G154300--Sobic002G029100 Sobic006G245100 Sobic006G245100 Sobic004G154300--Sobic006G245100 Sobic009G069200 Sobic009G069200 Sobic009G113100--Sobic009G069200 Sobic001G090300 Sobic001G090300 Sobic009G113100--Sobic001G090300 Sobic005G198200 Sobic005G198200 Sobic009G113100--Sobic005G198200 Sobic001G004100 Sobic001G004100 Sobic009G113100--Sobic001G004100 Sobic002G208400 Sobic002G208400 Sobic009G113100--Sobic002G208400 Sobic007G187600 Sobic007G187600 Sobic009G113100--Sobic007G187600 Sobic003G214700 Sobic003G214700 Sobic009G113100--Sobic003G214700 Sobic001G013300 Sobic001G013300 Sobic009G113100--Sobic001G013300 Sobic009G113100--Sobic006G061100 Sobic004G311400--Sobic002G029100 Sobic008G096000 Sobic008G096000 Sobic004G311400--Sobic008G096000 Sobic003G038100 Sobic003G038100 Sobic004G311400--Sobic003G038100 Sobic005G200800 Sobic005G200800 Sobic004G311400--Sobic005G200800 Sobic005G207500 Sobic005G207500 Sobic004G311400--Sobic005G207500 Sobic002G153700 Sobic002G153700 Sobic004G311400--Sobic002G153700 Sobic002G245000 Sobic002G245000 Sobic004G311400--Sobic002G245000 Sobic003G214600 Sobic003G214600 Sobic004G311400--Sobic003G214600 Sobic010G089400 Sobic010G089400 Sobic004G311400--Sobic010G089400 Sobic009G132650--Sobic005G176875 Sobic009G132650--Sobic009G060300 Sobic002G273000 Sobic002G273000 Sobic009G132650--Sobic002G273000 Sobic009G132650--Sobic004G071100 Sobic002G015500 Sobic002G015500 Sobic009G132650--Sobic002G015500 Sobic009G132650--Sobic005G184500 Sobic008G184500 Sobic008G184500 Sobic009G132650--Sobic008G184500 Sobic009G132650--Sobic005G033400 Sobic003G319050 Sobic003G319050 Sobic009G132650--Sobic003G319050
Octagon: transcription factors


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