Gene annotation
Transcriptome id Sobic.003G159500.1,Sobic.003G159500.2
Synonym Sb03g013890
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6Q3J1
Pfam PF13639
Panther DB PTHR22937 PTHR22937:SF42
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G05545 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g24880.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024493
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G159500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G179600 RWP-RK domain-containing protein, putative, expressed -
2 Sobic.006G061100 CBS domain containing membrane protein, putative, expressed -
3 Sobic.010G207400 protein kinase domain containing protein, expressed -
4 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
5 Sobic.010G071600 PTF1, putative, expressed -
6 Sobic.010G273800 "starch biosynthesis, 1,4-alpha-glucan branching enzyme"(PubMedID : 21853065)@1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed K00700: GBE1, 1,4-alpha-glucan branching enzyme
7 Sobic.007G042300 expressed protein -
8 Sobic.002G403200 ankyrin repeat domain containing protein, putative, expressed -
9 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
10 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.001G341001 - -
12 Sobic.010G227400 glycosyl hydrolase, family 31, putative, expressed K01187: alpha-glucosidase
13 Sobic.001G033400 protein kinase domain containing protein, expressed -
14 Sobic.006G164000 expressed protein -
15 Sobic.002G400400 choline transporter-related, putative, expressed -
16 Sobic.008G088200 DnaK family protein, putative, expressed -
17 Sobic.004G294100 ZOS2-14 - C2H2 zinc finger protein, expressed -
18 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
19 Sobic.006G141600 dehydrogenase, putative, expressed K00031: IDH1, IDH2, isocitrate dehydrogenase
20 Sobic.010G015900 transcriptional corepressor SEUSS, putative, expressed -


Gene co-expression network
sample Sobic003G159500 Sobic003G159500 Sobic006G179600 Sobic006G179600 Sobic003G159500--Sobic006G179600 Sobic006G061100 Sobic006G061100 Sobic003G159500--Sobic006G061100 Sobic010G207400 Sobic010G207400 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic007G042300 Sobic007G042300 Sobic003G159500--Sobic007G042300 Sobic002G403200 Sobic002G403200 Sobic003G159500--Sobic002G403200 Sobic008G160500 Sobic008G160500 Sobic003G159500--Sobic008G160500 Sobic006G179600--Sobic003G159500 Sobic006G179600--Sobic006G061100 Sobic006G179600--Sobic010G207400 Sobic001G341001 Sobic001G341001 Sobic006G179600--Sobic001G341001 Sobic010G227400 Sobic010G227400 Sobic006G179600--Sobic010G227400 Sobic006G015750 Sobic006G015750 Sobic006G179600--Sobic006G015750 Sobic003G091400 Sobic003G091400 Sobic006G179600--Sobic003G091400 Sobic002G409250 Sobic002G409250 Sobic006G179600--Sobic002G409250 Sobic002G078800 Sobic002G078800 Sobic006G179600--Sobic002G078800 Sobic004G075700 Sobic004G075700 Sobic006G061100--Sobic004G075700 Sobic003G026900 Sobic003G026900 Sobic006G061100--Sobic003G026900 Sobic009G060300 Sobic009G060300 Sobic006G061100--Sobic009G060300 Sobic006G061100--Sobic010G207400 Sobic006G015500 Sobic006G015500 Sobic006G061100--Sobic006G015500 Sobic004G154300 Sobic004G154300 Sobic006G061100--Sobic004G154300 Sobic009G113100 Sobic009G113100 Sobic006G061100--Sobic009G113100 Sobic004G311400 Sobic004G311400 Sobic006G061100--Sobic004G311400 Sobic009G132650 Sobic009G132650 Sobic006G061100--Sobic009G132650 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic009G132600--Sobic010G207400 Sobic007G091200 Sobic007G091200 Sobic009G132600--Sobic007G091200 Sobic009G253800 Sobic009G253800 Sobic009G132600--Sobic009G253800 Sobic001G278700 Sobic001G278700 Sobic009G132600--Sobic001G278700 Sobic009G132600--Sobic010G273800 Sobic001G196700 Sobic001G196700 Sobic009G132600--Sobic001G196700 Sobic009G033500 Sobic009G033500 Sobic009G132600--Sobic009G033500 Sobic003G207600 Sobic003G207600 Sobic009G132600--Sobic003G207600 Sobic009G007500 Sobic009G007500 Sobic009G132600--Sobic009G007500 Sobic010G071600--Sobic003G159500 Sobic010G071600--Sobic006G061100 Sobic010G071600--Sobic004G311400 Sobic010G071600--Sobic004G154300 Sobic010G071600--Sobic009G060300 Sobic009G159000 Sobic009G159000 Sobic010G071600--Sobic009G159000 Sobic003G358200 Sobic003G358200 Sobic010G071600--Sobic003G358200 Sobic001G534600 Sobic001G534600 Sobic010G071600--Sobic001G534600 Sobic010G071600--Sobic009G132650 Sobic006G015800 Sobic006G015800 Sobic010G273800--Sobic006G015800 Sobic003G092600 Sobic003G092600 Sobic010G273800--Sobic003G092600 Sobic004G262100 Sobic004G262100 Sobic010G273800--Sobic004G262100 Sobic001G324800 Sobic001G324800 Sobic010G273800--Sobic001G324800 Sobic010G093400 Sobic010G093400 Sobic010G273800--Sobic010G093400 Sobic002G015800 Sobic002G015800 Sobic010G273800--Sobic002G015800 Sobic009G207500 Sobic009G207500 Sobic010G273800--Sobic009G207500 Sobic001G425900 Sobic001G425900 Sobic010G273800--Sobic001G425900 Sobic010G273800--Sobic004G294100 Sobic010G015900 Sobic010G015900 Sobic007G042300--Sobic010G015900 Sobic007G042300--Sobic006G061100 Sobic007G042300--Sobic003G159500 Sobic009G239900 Sobic009G239900 Sobic007G042300--Sobic009G239900 Sobic007G042300--Sobic004G075700 Sobic001G480550 Sobic001G480550 Sobic007G042300--Sobic001G480550 Sobic007G042300--Sobic006G179600 Sobic001G423300 Sobic001G423300 Sobic007G042300--Sobic001G423300 Sobic007G042300--Sobic009G113100 Sobic003G192000 Sobic003G192000 Sobic002G403200--Sobic003G192000 Sobic002G403200--Sobic010G207400 Sobic002G359900 Sobic002G359900 Sobic002G403200--Sobic002G359900 Sobic004G272900 Sobic004G272900 Sobic002G403200--Sobic004G272900 Sobic001G033400 Sobic001G033400 Sobic002G403200--Sobic001G033400 Sobic002G403200--Sobic008G160500 Sobic004G196800 Sobic004G196800 Sobic002G403200--Sobic004G196800 Sobic009G030400 Sobic009G030400 Sobic002G403200--Sobic009G030400 Sobic005G032400 Sobic005G032400 Sobic002G403200--Sobic005G032400 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic008G160500--Sobic002G359900 Sobic008G160500--Sobic002G403200 Sobic003G004500 Sobic003G004500 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic008G160500--Sobic001G033400
Octagon: transcription factors


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