Gene annotation
Transcriptome id Sobic.002G400400.3,Sobic.002G400400.1,Sobic.002G400400.2
Synonym Sb02g041530
Functional annotation choline transporter-related, putative, expressed
UniProt A0A1B6QFY5 , A0A1W0W7L3 , A0A1W0W7S3
Pfam PF04515
Panther DB PTHR12385 PTHR12385:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G13760 : Plasma-membrane choline transporter family protein
RAP-DB (Rice) LOC_Os07g46240.1 : choline transporter-related, putative, expressed
MaizeGDB (Corn) Zm00025a015335
Brachypodium KQK14893
Barley HORVU2Hr1G023690.6 , HORVU2Hr1G023690.7 , HORVU2Hr1G023690.4 , HORVU2Hr1G023690.5 , HORVU2Hr1G023690.2 , HORVU2Hr1G023690.3 , HORVU2Hr1G023690.1
Wheat TraesCS2B02G157900 , TraesCS2D02G136600 , TraesCS2D02G136600 , TraesCS2A02G134400
Populus -


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cDNA sequences
Sobic.002G400400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G033400 protein kinase domain containing protein, expressed -
2 Sobic.002G103700 - -
3 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
4 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
5 Sobic.001G310700 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
6 Sobic.003G159500 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.007G050300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.010G207400 protein kinase domain containing protein, expressed -
9 Sobic.001G039500 protein kinase domain containing protein, expressed -
10 Sobic.006G120800 transglutaminase, putative, expressed -
11 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
12 Sobic.006G164000 expressed protein -
13 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
14 Sobic.010G253100 OsRhmbd3 - Putative Rhomboid homologue, expressed K09651: rhomboid domain-containing protein 1
15 Sobic.004G345100 expressed protein -
16 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
17 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
18 Sobic.001G206300 dof zinc finger domain containing protein, putative, expressed -
19 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
20 Sobic.002G274100 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic002G400400 Sobic002G400400 Sobic001G033400 Sobic001G033400 Sobic002G400400--Sobic001G033400 Sobic002G103700 Sobic002G103700 Sobic002G400400--Sobic002G103700 Sobic003G436500 Sobic003G436500 Sobic002G400400--Sobic003G436500 Sobic008G160500 Sobic008G160500 Sobic002G400400--Sobic008G160500 Sobic001G310700 Sobic001G310700 Sobic002G400400--Sobic001G310700 Sobic003G159500 Sobic003G159500 Sobic002G400400--Sobic003G159500 Sobic007G050300 Sobic007G050300 Sobic002G400400--Sobic007G050300 Sobic010G207400 Sobic010G207400 Sobic002G400400--Sobic010G207400 Sobic001G039500 Sobic001G039500 Sobic002G400400--Sobic001G039500 Sobic003G035500 Sobic003G035500 Sobic001G033400--Sobic003G035500 Sobic002G341100 Sobic002G341100 Sobic001G033400--Sobic002G341100 Sobic001G033400--Sobic010G207400 Sobic001G041400 Sobic001G041400 Sobic001G033400--Sobic001G041400 Sobic007G078300 Sobic007G078300 Sobic001G033400--Sobic007G078300 Sobic003G004500 Sobic003G004500 Sobic001G033400--Sobic003G004500 Sobic010G189100 Sobic010G189100 Sobic001G033400--Sobic010G189100 Sobic005G050600 Sobic005G050600 Sobic001G033400--Sobic005G050600 Sobic002G403200 Sobic002G403200 Sobic001G033400--Sobic002G403200 Sobic002G103700--Sobic002G400400 Sobic005G180800 Sobic005G180800 Sobic002G103700--Sobic005G180800 Sobic003G022200 Sobic003G022200 Sobic002G103700--Sobic003G022200 Sobic005G032400 Sobic005G032400 Sobic002G103700--Sobic005G032400 Sobic003G415100 Sobic003G415100 Sobic002G103700--Sobic003G415100 Sobic001G218200 Sobic001G218200 Sobic002G103700--Sobic001G218200 Sobic002G103700--Sobic007G078300 Sobic001G129500 Sobic001G129500 Sobic002G103700--Sobic001G129500 Sobic007G155900 Sobic007G155900 Sobic002G103700--Sobic007G155900 Sobic002G359900 Sobic002G359900 Sobic003G436500--Sobic002G359900 Sobic003G031200 Sobic003G031200 Sobic003G436500--Sobic003G031200 Sobic003G436500--Sobic002G400400 Sobic001G147100 Sobic001G147100 Sobic003G436500--Sobic001G147100 Sobic005G187500 Sobic005G187500 Sobic003G436500--Sobic005G187500 Sobic010G253100 Sobic010G253100 Sobic003G436500--Sobic010G253100 Sobic004G028800 Sobic004G028800 Sobic003G436500--Sobic004G028800 Sobic003G436500--Sobic008G160500 Sobic002G129200 Sobic002G129200 Sobic003G436500--Sobic002G129200 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic008G160500--Sobic002G359900 Sobic008G160500--Sobic002G403200 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic008G160500--Sobic001G033400 Sobic001G310700--Sobic008G160500 Sobic001G310700--Sobic002G400400 Sobic001G310700--Sobic001G033400 Sobic002G276900 Sobic002G276900 Sobic001G310700--Sobic002G276900 Sobic006G256300 Sobic006G256300 Sobic001G310700--Sobic006G256300 Sobic001G279100 Sobic001G279100 Sobic001G310700--Sobic001G279100 Sobic007G046200 Sobic007G046200 Sobic001G310700--Sobic007G046200 Sobic004G250900 Sobic004G250900 Sobic001G310700--Sobic004G250900 Sobic007G018200 Sobic007G018200 Sobic001G310700--Sobic007G018200 Sobic006G179600 Sobic006G179600 Sobic003G159500--Sobic006G179600 Sobic006G061100 Sobic006G061100 Sobic003G159500--Sobic006G061100 Sobic003G159500--Sobic010G207400 Sobic009G132600 Sobic009G132600 Sobic003G159500--Sobic009G132600 Sobic010G071600 Sobic010G071600 Sobic003G159500--Sobic010G071600 Sobic010G273800 Sobic010G273800 Sobic003G159500--Sobic010G273800 Sobic007G042300 Sobic007G042300 Sobic003G159500--Sobic007G042300 Sobic003G159500--Sobic002G403200 Sobic003G159500--Sobic008G160500 Sobic006G051900 Sobic006G051900 Sobic007G050300--Sobic006G051900 Sobic007G050300--Sobic006G120800 Sobic010G197800 Sobic010G197800 Sobic007G050300--Sobic010G197800 Sobic002G095700 Sobic002G095700 Sobic007G050300--Sobic002G095700 Sobic009G192500 Sobic009G192500 Sobic007G050300--Sobic009G192500 Sobic010G079800 Sobic010G079800 Sobic007G050300--Sobic010G079800 Sobic001G038100 Sobic001G038100 Sobic007G050300--Sobic001G038100 Sobic003G253400 Sobic003G253400 Sobic007G050300--Sobic003G253400 Sobic007G117100 Sobic007G117100 Sobic007G050300--Sobic007G117100 Sobic005G171800 Sobic005G171800 Sobic010G207400--Sobic005G171800 Sobic004G294100 Sobic004G294100 Sobic010G207400--Sobic004G294100 Sobic009G025100 Sobic009G025100 Sobic010G207400--Sobic009G025100 Sobic003G230500 Sobic003G230500 Sobic010G207400--Sobic003G230500 Sobic010G227400 Sobic010G227400 Sobic010G207400--Sobic010G227400 Sobic010G168500 Sobic010G168500 Sobic010G207400--Sobic010G168500 Sobic009G077250 Sobic009G077250 Sobic010G207400--Sobic009G077250 Sobic008G039700 Sobic008G039700 Sobic010G207400--Sobic008G039700 Sobic001G158600 Sobic001G158600 Sobic010G207400--Sobic001G158600 Sobic010G015900 Sobic010G015900 Sobic001G039500--Sobic010G015900 Sobic004G023900 Sobic004G023900 Sobic001G039500--Sobic004G023900 Sobic001G039500--Sobic002G400400 Sobic001G039500--Sobic003G159500 Sobic006G245100 Sobic006G245100 Sobic001G039500--Sobic006G245100 Sobic008G115000 Sobic008G115000 Sobic001G039500--Sobic008G115000 Sobic007G041300 Sobic007G041300 Sobic001G039500--Sobic007G041300 Sobic001G039500--Sobic006G120800 Sobic001G039500--Sobic001G033400
Octagon: transcription factors


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