Gene annotation
Transcriptome id Sobic.004G028800.1,Sobic.004G028800.2
Synonym Sb04g002540
Functional annotation expressed protein
UniProt A0A194YMF5
Pfam PF13920
Panther DB PTHR10044 PTHR10044:SF105
NCBI CDD KOG1100; Predicted E3 ubiquitin ligase
KEGG Orthology K19042; E3 ubiquitin-protein ligase BOI and related proteins
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G10650 : SBP (S-ribonuclease binding protein) family protein
RAP-DB (Rice) LOC_Os02g03760.2 : expressed protein
MaizeGDB (Corn) Zm00025a018842
Brachypodium -
Barley HORVU6Hr1G015410.1 , HORVU6Hr1G015410.3 , HORVU6Hr1G015410.2 , HORVU6Hr1G015410.5 , HORVU6Hr1G015410.4 , HORVU6Hr1G015410.7 , HORVU6Hr1G015410.6
Wheat TraesCSU02G113400 , TraesCS6B02G118100
Populus -


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cDNA sequences
Sobic.004G028800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G244500 nuclease PA3, putative, expressed -
2 Sobic.001G488200 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
3 Sobic.006G151001 - -
4 Sobic.004G155300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.003G062200 transcription factor HBP-1b, putative, expressed -
6 Sobic.004G345100 expressed protein -
7 Sobic.009G009800 expressed protein -
8 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
9 Sobic.006G066600 DNA-binding protein S1FA, putative, expressed -
10 Sobic.004G067900 expressed protein -
11 Sobic.003G376000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
12 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
13 Sobic.006G133000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
14 Sobic.007G034600 U box protein 8, putative, expressed -
15 Sobic.001G233900 expressed protein -
16 Sobic.004G250900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aldehyde dehydrogenase, putative, expressed K00128: aldehyde dehydrogenase (NAD+)
17 Sobic.003G421900 glycosyl hydrolases family 17, putative, expressed -
18 Sobic.008G037000 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
20 Sobic.006G096200 oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G028800 Sobic004G028800 Sobic006G244500 Sobic006G244500 Sobic004G028800--Sobic006G244500 Sobic001G488200 Sobic001G488200 Sobic004G028800--Sobic001G488200 Sobic006G151001 Sobic006G151001 Sobic004G028800--Sobic006G151001 Sobic004G155300 Sobic004G155300 Sobic004G028800--Sobic004G155300 Sobic003G062200 Sobic003G062200 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic009G009800 Sobic009G009800 Sobic004G028800--Sobic009G009800 Sobic002G359900 Sobic002G359900 Sobic004G028800--Sobic002G359900 Sobic006G066600 Sobic006G066600 Sobic004G028800--Sobic006G066600 Sobic006G244500--Sobic009G009800 Sobic006G244500--Sobic003G062200 Sobic003G376000 Sobic003G376000 Sobic006G244500--Sobic003G376000 Sobic005G158901 Sobic005G158901 Sobic006G244500--Sobic005G158901 Sobic006G244500--Sobic006G151001 Sobic008G037000 Sobic008G037000 Sobic006G244500--Sobic008G037000 Sobic006G096200 Sobic006G096200 Sobic006G244500--Sobic006G096200 Sobic010G031600 Sobic010G031600 Sobic006G244500--Sobic010G031600 Sobic001G277800 Sobic001G277800 Sobic006G244500--Sobic001G277800 Sobic001G488200--Sobic006G244500 Sobic001G488200--Sobic006G151001 Sobic001G488200--Sobic004G028800 Sobic001G488200--Sobic009G009800 Sobic001G488200--Sobic003G062200 Sobic006G206500 Sobic006G206500 Sobic001G488200--Sobic006G206500 Sobic001G488200--Sobic005G158901 Sobic003G421900 Sobic003G421900 Sobic001G488200--Sobic003G421900 Sobic001G488200--Sobic006G066600 Sobic009G041100 Sobic009G041100 Sobic006G151001--Sobic009G041100 Sobic006G151001--Sobic003G376000 Sobic006G151001--Sobic008G037000 Sobic006G151001--Sobic003G062200 Sobic006G151001--Sobic006G096200 Sobic009G169650 Sobic009G169650 Sobic006G151001--Sobic009G169650 Sobic006G151001--Sobic006G244500 Sobic006G151001--Sobic009G009800 Sobic010G044600 Sobic010G044600 Sobic006G151001--Sobic010G044600 Sobic003G304500 Sobic003G304500 Sobic004G155300--Sobic003G304500 Sobic009G025100 Sobic009G025100 Sobic004G155300--Sobic009G025100 Sobic004G155300--Sobic004G028800 Sobic004G318400 Sobic004G318400 Sobic004G155300--Sobic004G318400 Sobic004G274500 Sobic004G274500 Sobic004G155300--Sobic004G274500 Sobic004G155300--Sobic006G244500 Sobic001G170500 Sobic001G170500 Sobic004G155300--Sobic001G170500 Sobic004G196800 Sobic004G196800 Sobic004G155300--Sobic004G196800 Sobic007G018000 Sobic007G018000 Sobic004G155300--Sobic007G018000 Sobic003G062200--Sobic006G244500 Sobic003G062200--Sobic009G009800 Sobic003G062200--Sobic003G376000 Sobic003G062200--Sobic008G037000 Sobic003G062200--Sobic006G151001 Sobic003G062200--Sobic006G096200 Sobic003G062200--Sobic010G031600 Sobic010G136300 Sobic010G136300 Sobic003G062200--Sobic010G136300 Sobic003G062200--Sobic009G041100 Sobic006G072400 Sobic006G072400 Sobic004G345100--Sobic006G072400 Sobic004G345100--Sobic004G028800 Sobic003G004500 Sobic003G004500 Sobic004G345100--Sobic003G004500 Sobic006G261100 Sobic006G261100 Sobic004G345100--Sobic006G261100 Sobic004G345100--Sobic002G359900 Sobic002G252900 Sobic002G252900 Sobic004G345100--Sobic002G252900 Sobic006G120800 Sobic006G120800 Sobic004G345100--Sobic006G120800 Sobic001G458200 Sobic001G458200 Sobic004G345100--Sobic001G458200 Sobic003G415100 Sobic003G415100 Sobic004G345100--Sobic003G415100 Sobic009G009800--Sobic006G244500 Sobic009G009800--Sobic010G031600 Sobic009G009800--Sobic003G376000 Sobic009G009800--Sobic001G277800 Sobic009G009800--Sobic010G136300 Sobic009G009800--Sobic005G158901 Sobic009G009800--Sobic008G037000 Sobic007G049400 Sobic007G049400 Sobic009G009800--Sobic007G049400 Sobic005G112066 Sobic005G112066 Sobic009G009800--Sobic005G112066 Sobic010G253100 Sobic010G253100 Sobic002G359900--Sobic010G253100 Sobic003G436500 Sobic003G436500 Sobic002G359900--Sobic003G436500 Sobic002G359900--Sobic006G261100 Sobic002G359900--Sobic006G120800 Sobic003G031200 Sobic003G031200 Sobic002G359900--Sobic003G031200 Sobic002G359900--Sobic001G458200 Sobic002G403200 Sobic002G403200 Sobic002G359900--Sobic002G403200 Sobic001G038100 Sobic001G038100 Sobic002G359900--Sobic001G038100 Sobic002G204000 Sobic002G204000 Sobic002G359900--Sobic002G204000 Sobic006G066600--Sobic004G318400 Sobic004G067900 Sobic004G067900 Sobic006G066600--Sobic004G067900 Sobic004G102900 Sobic004G102900 Sobic006G066600--Sobic004G102900 Sobic006G066600--Sobic006G244500 Sobic006G066600--Sobic007G018000 Sobic006G066600--Sobic004G028800 Sobic006G066600--Sobic001G488200 Sobic006G066600--Sobic004G155300 Sobic002G308400 Sobic002G308400 Sobic006G066600--Sobic002G308400
Octagon: transcription factors


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