Gene annotation
Transcriptome id Sobic.006G099800.1
Synonym Sb06g018340
Functional annotation signal recognition particle 19 kDa protein, putative, expressed
UniProt C5Y9D6
Pfam PF01922
Panther DB PTHR17453 PTHR17453:SF0
NCBI CDD -
KEGG Orthology K03105; signal recognition particle subunit SRP19
Gene Ontology GO:0008312; 7S RNA binding GO:0006614SRP-dependent cotranslational protein targeting to membrane


Orthologs (automatic annotation)
TAIR AT1G48160 : signal recognition particle 19 kDa protein, putative / SRP19, putative
RAP-DB (Rice) LOC_Os06g23430.2 : signal recognition particle 19 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a011174 , Zm00025a009360
Brachypodium KQJ83188 , KQJ83189 , KQJ83191 , KQJ83190
Barley HORVU7Hr1G082220.3 , HORVU7Hr1G082220.2 , HORVU7Hr1G082220.1
Wheat TraesCS7A02G333600 , TraesCS7B02G245200 , TraesCS7D02G341200
Populus -


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cDNA sequences
Sobic.006G099800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
2 Sobic.007G038800 expressed protein -
3 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
4 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
5 Sobic.003G434000 expressed protein K06170: PSENEN, presenilin enhancer 2
6 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
7 Sobic.008G108500 histone deacetylase 6, putative, expressed -
8 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
9 Sobic.004G028800 expressed protein K19042: E3 ubiquitin-protein ligase BOI and related proteins
10 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
11 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
12 Sobic.009G100300 expressed protein -
13 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
14 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
15 Sobic.002G266800 expressed protein K18178: COA5, cytochrome c oxidase assembly factor 5
16 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
17 Sobic.010G260400 rpp14 family protein, expressed K03537: ribonuclease P/MRP protein subunit POP5
18 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -
19 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
20 Sobic.003G429700 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic006G099800 Sobic006G099800 Sobic002G276900 Sobic002G276900 Sobic006G099800--Sobic002G276900 Sobic007G038800 Sobic007G038800 Sobic006G099800--Sobic007G038800 Sobic001G148700 Sobic001G148700 Sobic006G099800--Sobic001G148700 Sobic003G227200 Sobic003G227200 Sobic006G099800--Sobic003G227200 Sobic003G434000 Sobic003G434000 Sobic006G099800--Sobic003G434000 Sobic007G192100 Sobic007G192100 Sobic006G099800--Sobic007G192100 Sobic008G108500 Sobic008G108500 Sobic006G099800--Sobic008G108500 Sobic003G031200 Sobic003G031200 Sobic006G099800--Sobic003G031200 Sobic004G028800 Sobic004G028800 Sobic006G099800--Sobic004G028800 Sobic006G261100 Sobic006G261100 Sobic002G276900--Sobic006G261100 Sobic002G276900--Sobic006G099800 Sobic009G100300 Sobic009G100300 Sobic002G276900--Sobic009G100300 Sobic003G416600 Sobic003G416600 Sobic002G276900--Sobic003G416600 Sobic002G121000 Sobic002G121000 Sobic002G276900--Sobic002G121000 Sobic009G034400 Sobic009G034400 Sobic002G276900--Sobic009G034400 Sobic001G512900 Sobic001G512900 Sobic002G276900--Sobic001G512900 Sobic010G253100 Sobic010G253100 Sobic002G276900--Sobic010G253100 Sobic002G179500 Sobic002G179500 Sobic002G276900--Sobic002G179500 Sobic009G036900 Sobic009G036900 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic001G126200 Sobic001G126200 Sobic007G038800--Sobic001G126200 Sobic004G063500 Sobic004G063500 Sobic001G148700--Sobic004G063500 Sobic001G441000 Sobic001G441000 Sobic001G148700--Sobic001G441000 Sobic010G262300 Sobic010G262300 Sobic001G148700--Sobic010G262300 Sobic001G134200 Sobic001G134200 Sobic001G148700--Sobic001G134200 Sobic009G149800 Sobic009G149800 Sobic001G148700--Sobic009G149800 Sobic001G067601 Sobic001G067601 Sobic001G148700--Sobic001G067601 Sobic004G259600 Sobic004G259600 Sobic001G148700--Sobic004G259600 Sobic007G161700 Sobic007G161700 Sobic001G148700--Sobic007G161700 Sobic001G031800 Sobic001G031800 Sobic001G148700--Sobic001G031800 Sobic008G088600 Sobic008G088600 Sobic003G227200--Sobic008G088600 Sobic004G012800 Sobic004G012800 Sobic003G227200--Sobic004G012800 Sobic003G253500 Sobic003G253500 Sobic003G227200--Sobic003G253500 Sobic009G191600 Sobic009G191600 Sobic003G227200--Sobic009G191600 Sobic003G227200--Sobic006G099800 Sobic009G171100 Sobic009G171100 Sobic003G227200--Sobic009G171100 Sobic003G227200--Sobic001G441000 Sobic003G227200--Sobic001G148700 Sobic010G201388 Sobic010G201388 Sobic003G227200--Sobic010G201388 Sobic001G349400 Sobic001G349400 Sobic003G434000--Sobic001G349400 Sobic002G051200 Sobic002G051200 Sobic003G434000--Sobic002G051200 Sobic003G434000--Sobic006G099800 Sobic009G052500 Sobic009G052500 Sobic003G434000--Sobic009G052500 Sobic003G434000--Sobic004G012800 Sobic003G434000--Sobic007G038800 Sobic001G041100 Sobic001G041100 Sobic003G434000--Sobic001G041100 Sobic002G204000 Sobic002G204000 Sobic003G434000--Sobic002G204000 Sobic001G285300 Sobic001G285300 Sobic003G434000--Sobic001G285300 Sobic007G192100--Sobic008G108500 Sobic001G036700 Sobic001G036700 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic002G176400 Sobic002G176400 Sobic007G192100--Sobic002G176400 Sobic007G192100--Sobic001G126200 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic007G192100--Sobic007G117800 Sobic008G108500--Sobic007G192100 Sobic008G108500--Sobic002G176400 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic008G108500--Sobic001G036700 Sobic008G108500--Sobic007G038800 Sobic004G122000 Sobic004G122000 Sobic008G108500--Sobic004G122000 Sobic008G108500--Sobic007G117800 Sobic009G086200 Sobic009G086200 Sobic008G108500--Sobic009G086200 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic002G044000 Sobic002G044000 Sobic003G031200--Sobic002G044000 Sobic003G043400 Sobic003G043400 Sobic003G031200--Sobic003G043400 Sobic003G031200--Sobic001G402600 Sobic003G031200--Sobic001G285300 Sobic006G244500 Sobic006G244500 Sobic004G028800--Sobic006G244500 Sobic001G488200 Sobic001G488200 Sobic004G028800--Sobic001G488200 Sobic006G151001 Sobic006G151001 Sobic004G028800--Sobic006G151001 Sobic004G155300 Sobic004G155300 Sobic004G028800--Sobic004G155300 Sobic003G062200 Sobic003G062200 Sobic004G028800--Sobic003G062200 Sobic004G345100 Sobic004G345100 Sobic004G028800--Sobic004G345100 Sobic009G009800 Sobic009G009800 Sobic004G028800--Sobic009G009800 Sobic004G028800--Sobic002G359900 Sobic006G066600 Sobic006G066600 Sobic004G028800--Sobic006G066600
Octagon: transcription factors


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