Gene annotation
Transcriptome id Sobic.003G429700.1
Synonym Sb03g046160
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XIH0
Pfam PF13639
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G19430 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g72480.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025944
Brachypodium KQK11603
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G429700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
2 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.004G316900 autophagy-related protein 12, putative, expressed K08336: ubiquitin-like protein ATG12
4 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
5 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
6 Sobic.007G038800 expressed protein -
7 Sobic.006G207500 expressed protein -
8 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
9 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
10 Sobic.009G252800 expressed protein -
11 Sobic.003G434000 expressed protein K06170: PSENEN, presenilin enhancer 2
12 Sobic.002G261900 arabinogalactan protein, putative, expressed -
13 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.001G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
15 Sobic.004G339200 CK1_CaseinKinase_1.6 - CK1 includes the casein kinase 1 kinases, expressed -
16 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
17 Sobic.002G194100 annexin, putative, expressed K17095: annexin A7/11
18 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
19 Sobic.001G439600 26S proteasome non-ATPase regulatory subunit 4, putative, expressed K03029: PSMD4, 26S proteasome regulatory subunit N10
20 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -


Gene co-expression network
sample Sobic003G429700 Sobic003G429700 Sobic004G248800 Sobic004G248800 Sobic003G429700--Sobic004G248800 Sobic003G403400 Sobic003G403400 Sobic003G429700--Sobic003G403400 Sobic004G316900 Sobic004G316900 Sobic003G429700--Sobic004G316900 Sobic001G094500 Sobic001G094500 Sobic003G429700--Sobic001G094500 Sobic004G265700 Sobic004G265700 Sobic003G429700--Sobic004G265700 Sobic007G038800 Sobic007G038800 Sobic003G429700--Sobic007G038800 Sobic006G207500 Sobic006G207500 Sobic003G429700--Sobic006G207500 Sobic004G012800 Sobic004G012800 Sobic003G429700--Sobic004G012800 Sobic002G256300 Sobic002G256300 Sobic003G429700--Sobic002G256300 Sobic006G141500 Sobic006G141500 Sobic004G248800--Sobic006G141500 Sobic001G529000 Sobic001G529000 Sobic004G248800--Sobic001G529000 Sobic010G039800 Sobic010G039800 Sobic004G248800--Sobic010G039800 Sobic003G253000 Sobic003G253000 Sobic004G248800--Sobic003G253000 Sobic004G293700 Sobic004G293700 Sobic004G248800--Sobic004G293700 Sobic008G161800 Sobic008G161800 Sobic004G248800--Sobic008G161800 Sobic002G263800 Sobic002G263800 Sobic004G248800--Sobic002G263800 Sobic002G218000 Sobic002G218000 Sobic004G248800--Sobic002G218000 Sobic003G249800 Sobic003G249800 Sobic004G248800--Sobic003G249800 Sobic001G389900 Sobic001G389900 Sobic003G403400--Sobic001G389900 Sobic001G066700 Sobic001G066700 Sobic003G403400--Sobic001G066700 Sobic003G063200 Sobic003G063200 Sobic003G403400--Sobic003G063200 Sobic003G403400--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic003G403400--Sobic005G111100 Sobic003G350300 Sobic003G350300 Sobic003G403400--Sobic003G350300 Sobic010G225300 Sobic010G225300 Sobic003G403400--Sobic010G225300 Sobic009G232800 Sobic009G232800 Sobic003G403400--Sobic009G232800 Sobic003G403400--Sobic004G265700 Sobic001G136900 Sobic001G136900 Sobic004G316900--Sobic001G136900 Sobic002G204000 Sobic002G204000 Sobic004G316900--Sobic002G204000 Sobic004G316900--Sobic002G256300 Sobic004G316900--Sobic001G529000 Sobic003G316850 Sobic003G316850 Sobic004G316900--Sobic003G316850 Sobic010G193800 Sobic010G193800 Sobic004G316900--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic004G316900--Sobic004G226800 Sobic007G203700 Sobic007G203700 Sobic004G316900--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic004G316900--Sobic001G439600 Sobic006G231700 Sobic006G231700 Sobic001G094500--Sobic006G231700 Sobic001G128400 Sobic001G128400 Sobic001G094500--Sobic001G128400 Sobic001G094500--Sobic005G111100 Sobic001G094500--Sobic004G265700 Sobic002G279000 Sobic002G279000 Sobic001G094500--Sobic002G279000 Sobic001G532100 Sobic001G532100 Sobic001G094500--Sobic001G532100 Sobic007G152400 Sobic007G152400 Sobic001G094500--Sobic007G152400 Sobic001G094500--Sobic001G529000 Sobic007G163700 Sobic007G163700 Sobic001G094500--Sobic007G163700 Sobic004G265700--Sobic005G111100 Sobic002G078400 Sobic002G078400 Sobic004G265700--Sobic002G078400 Sobic001G041100 Sobic001G041100 Sobic004G265700--Sobic001G041100 Sobic003G362400 Sobic003G362400 Sobic004G265700--Sobic003G362400 Sobic004G265700--Sobic006G141500 Sobic010G065400 Sobic010G065400 Sobic004G265700--Sobic010G065400 Sobic002G116200 Sobic002G116200 Sobic004G265700--Sobic002G116200 Sobic002G222900 Sobic002G222900 Sobic004G265700--Sobic002G222900 Sobic007G068000 Sobic007G068000 Sobic004G265700--Sobic007G068000 Sobic009G036900 Sobic009G036900 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G192100 Sobic007G192100 Sobic007G038800--Sobic007G192100 Sobic009G034400 Sobic009G034400 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic008G108500 Sobic008G108500 Sobic007G038800--Sobic008G108500 Sobic001G126200 Sobic001G126200 Sobic007G038800--Sobic001G126200 Sobic010G267500 Sobic010G267500 Sobic006G207500--Sobic010G267500 Sobic006G207500--Sobic010G065400 Sobic009G031200 Sobic009G031200 Sobic006G207500--Sobic009G031200 Sobic006G183000 Sobic006G183000 Sobic006G207500--Sobic006G183000 Sobic006G222400 Sobic006G222400 Sobic006G207500--Sobic006G222400 Sobic007G097900 Sobic007G097900 Sobic006G207500--Sobic007G097900 Sobic003G052400 Sobic003G052400 Sobic006G207500--Sobic003G052400 Sobic001G061700 Sobic001G061700 Sobic006G207500--Sobic001G061700 Sobic008G137600 Sobic008G137600 Sobic006G207500--Sobic008G137600 Sobic004G137900 Sobic004G137900 Sobic004G012800--Sobic004G137900 Sobic006G231500 Sobic006G231500 Sobic004G012800--Sobic006G231500 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic004G012800--Sobic005G111100 Sobic003G358300 Sobic003G358300 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic004G012800--Sobic001G532100 Sobic009G246950 Sobic009G246950 Sobic002G256300--Sobic009G246950 Sobic010G083700 Sobic010G083700 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic010G168600 Sobic010G168600 Sobic002G256300--Sobic010G168600 Sobic002G256300--Sobic001G136900 Sobic002G256300--Sobic010G193800 Sobic002G256300--Sobic001G439600 Sobic006G263900 Sobic006G263900 Sobic002G256300--Sobic006G263900 Sobic009G171700 Sobic009G171700 Sobic002G256300--Sobic009G171700
Octagon: transcription factors


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