Gene annotation
Transcriptome id Sobic.003G403400.1
Synonym Sb03g043910
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XG94
Pfam PF13639
Panther DB PTHR23041 PTHR23041:SF63
NCBI CDD KOG0320; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G07200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g69040.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026280
Brachypodium -
Barley -
Wheat TraesCS3D02G421200 , TraesCS3B02G462600 , TraesCS3A02G426400
Populus -


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cDNA sequences
Sobic.003G403400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389900 aquaporin SIP2-1, putative, expressed K09875: aquaporin SIP
2 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
3 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
5 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
6 Sobic.003G350300 ubiquitin-conjugating enzyme, putative, expressed K10575: UBE2G1, ubiquitin-conjugating enzyme E2 G1
7 Sobic.010G225300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
8 Sobic.009G232800 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
9 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
10 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
11 Sobic.003G072300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
12 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
13 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
14 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
15 Sobic.001G037000 PHD finger protein, putative, expressed -
16 Sobic.002G407900 copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
17 Sobic.002G222900 transmembrane protein 50A, putative, expressed -
18 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
19 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
20 Sobic.006G141500 expressed protein -


Gene co-expression network
sample Sobic003G403400 Sobic003G403400 Sobic001G389900 Sobic001G389900 Sobic003G403400--Sobic001G389900 Sobic001G066700 Sobic001G066700 Sobic003G403400--Sobic001G066700 Sobic003G063200 Sobic003G063200 Sobic003G403400--Sobic003G063200 Sobic002G218000 Sobic002G218000 Sobic003G403400--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic003G403400--Sobic005G111100 Sobic003G350300 Sobic003G350300 Sobic003G403400--Sobic003G350300 Sobic010G225300 Sobic010G225300 Sobic003G403400--Sobic010G225300 Sobic009G232800 Sobic009G232800 Sobic003G403400--Sobic009G232800 Sobic004G265700 Sobic004G265700 Sobic003G403400--Sobic004G265700 Sobic001G389900--Sobic003G403400 Sobic001G389900--Sobic009G232800 Sobic001G477300 Sobic001G477300 Sobic001G389900--Sobic001G477300 Sobic002G046100 Sobic002G046100 Sobic001G389900--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic001G389900--Sobic004G177700 Sobic009G063900 Sobic009G063900 Sobic001G389900--Sobic009G063900 Sobic001G389900--Sobic001G066700 Sobic001G447100 Sobic001G447100 Sobic001G389900--Sobic001G447100 Sobic003G072300 Sobic003G072300 Sobic001G389900--Sobic003G072300 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic001G066700--Sobic003G403400 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200 Sobic005G028700 Sobic005G028700 Sobic003G063200--Sobic005G028700 Sobic010G204600 Sobic010G204600 Sobic003G063200--Sobic010G204600 Sobic004G247200 Sobic004G247200 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic009G180000 Sobic009G180000 Sobic002G218000--Sobic009G180000 Sobic006G141500 Sobic006G141500 Sobic002G218000--Sobic006G141500 Sobic003G249800 Sobic003G249800 Sobic002G218000--Sobic003G249800 Sobic010G204500 Sobic010G204500 Sobic002G218000--Sobic010G204500 Sobic002G218000--Sobic005G111100 Sobic002G218000--Sobic001G066700 Sobic010G106200 Sobic010G106200 Sobic002G218000--Sobic010G106200 Sobic010G243200 Sobic010G243200 Sobic002G218000--Sobic010G243200 Sobic002G330000 Sobic002G330000 Sobic002G218000--Sobic002G330000 Sobic001G128400 Sobic001G128400 Sobic005G111100--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic006G231700 Sobic006G231700 Sobic005G111100--Sobic006G231700 Sobic005G111100--Sobic002G218000 Sobic004G187900 Sobic004G187900 Sobic003G350300--Sobic004G187900 Sobic002G345300 Sobic002G345300 Sobic003G350300--Sobic002G345300 Sobic003G350300--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic003G350300--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic003G350300--Sobic001G281400 Sobic004G321300 Sobic004G321300 Sobic003G350300--Sobic004G321300 Sobic010G274900 Sobic010G274900 Sobic003G350300--Sobic010G274900 Sobic010G086200 Sobic010G086200 Sobic003G350300--Sobic010G086200 Sobic003G181500 Sobic003G181500 Sobic003G350300--Sobic003G181500 Sobic002G222900 Sobic002G222900 Sobic010G225300--Sobic002G222900 Sobic010G225300--Sobic001G128400 Sobic010G225300--Sobic001G066700 Sobic010G225300--Sobic005G111100 Sobic003G155400 Sobic003G155400 Sobic010G225300--Sobic003G155400 Sobic010G225300--Sobic002G218000 Sobic001G459200 Sobic001G459200 Sobic010G225300--Sobic001G459200 Sobic007G091000 Sobic007G091000 Sobic010G225300--Sobic007G091000 Sobic001G067601 Sobic001G067601 Sobic010G225300--Sobic001G067601 Sobic009G232800--Sobic001G389900 Sobic009G232800--Sobic003G403400 Sobic002G251900 Sobic002G251900 Sobic009G232800--Sobic002G251900 Sobic006G062800 Sobic006G062800 Sobic009G232800--Sobic006G062800 Sobic009G232800--Sobic002G046100 Sobic009G232800--Sobic003G285800 Sobic004G024200 Sobic004G024200 Sobic009G232800--Sobic004G024200 Sobic009G232800--Sobic001G447100 Sobic009G232800--Sobic003G249800 Sobic004G265700--Sobic005G111100 Sobic002G078400 Sobic002G078400 Sobic004G265700--Sobic002G078400 Sobic001G041100 Sobic001G041100 Sobic004G265700--Sobic001G041100 Sobic003G362400 Sobic003G362400 Sobic004G265700--Sobic003G362400 Sobic004G265700--Sobic006G141500 Sobic010G065400 Sobic010G065400 Sobic004G265700--Sobic010G065400 Sobic002G116200 Sobic002G116200 Sobic004G265700--Sobic002G116200 Sobic004G265700--Sobic002G222900 Sobic007G068000 Sobic007G068000 Sobic004G265700--Sobic007G068000
Octagon: transcription factors


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