Gene annotation
Transcriptome id Sobic.004G063500.1
Synonym Sb04g005280
Functional annotation protein transport protein SEC61 subunit gamma, putative, expressed
UniProt C5XWA2
Pfam PF00584
Panther DB PTHR12309
NCBI CDD KOG3498; Preprotein translocase, gamma subunit
KEGG Orthology K07342; SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
Gene Ontology GO:0016020; membrane GO:0006886intracellular protein transport GO:0006605protein targeting


Orthologs (automatic annotation)
TAIR AT4G24920 : secE/sec61-gamma protein transport protein
RAP-DB (Rice) LOC_Os02g08180.1 : protein transport protein SEC61 subunit gamma, putative, expressed
MaizeGDB (Corn) Zm00025a042020 , Zm00025a034728
Brachypodium KQK16871 , KQJ93627
Barley HORVU2Hr1G107590.1 , HORVU5Hr1G079370.3 , HORVU5Hr1G079370.2 , HORVU3Hr1G069810.2 , HORVU3Hr1G069810.1 , HORVU7Hr1G111600.2 , HORVU7Hr1G111600.3 , HORVU7Hr1G111600.1 , HORVU7Hr1G111600.4 , HORVU1Hr1G027460.1 , HORVU5Hr1G087890.1 , HORVU6Hr1G030000.2 , HORVU6Hr1G030000.1 , HORVU2Hr1G107610.1
Wheat TraesCS6B02G228700 , TraesCS1B02G151100 , TraesCS5A02G299000 , TraesCS7B02G304300 , TraesCS1A02G312100 , TraesCS7D02G486200 , TraesCS7A02G525300 , TraesCS1A02G022600 , TraesCS6B02G178700 , TraesCS2A02G337500 , TraesCS1A02G343100 , TraesCS7A02G499400 , TraesCS2A02G055100 , TraesCS1B02G433900 , TraesCS7B02G406300 , TraesCS6D02G140600 , TraesCS2A02G356100 , TraesCS6A02G150600 , TraesCS1A02G215200 , TraesCSU02G268100 , TraesCS7A02G455100 , TraesCS2B02G001300 , TraesCSU02G220500 , TraesCS7A02G423500
Populus PNT57929


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cDNA sequences
Sobic.004G063500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
2 Sobic.003G325700 expressed protein -
3 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
4 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
5 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
6 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
7 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.002G113500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
9 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
10 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
11 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
12 Sobic.001G148700 signal peptidase complex subunit 1, putative, expressed K12946: signal peptidase complex subunit 1
13 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
14 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
15 Sobic.001G154400 expp1 protein precursor, putative, expressed -
16 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
17 Sobic.002G051700 transmembrane BAX inhibitor motif-containing protein, putative, expressed K06890: uncharacterized protein
18 Sobic.007G161700 expressed protein K17769: mitochondrial import receptor subunit TOM22
19 Sobic.003G024500 expressed protein -
20 Sobic.001G130400 expressed protein -


Gene co-expression network
sample Sobic004G063500 Sobic004G063500 Sobic009G120100 Sobic009G120100 Sobic004G063500--Sobic009G120100 Sobic003G325700 Sobic003G325700 Sobic004G063500--Sobic003G325700 Sobic003G063200 Sobic003G063200 Sobic004G063500--Sobic003G063200 Sobic001G066700 Sobic001G066700 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic009G216800 Sobic009G216800 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic002G113500 Sobic002G113500 Sobic004G063500--Sobic002G113500 Sobic006G231700 Sobic006G231700 Sobic004G063500--Sobic006G231700 Sobic009G120100--Sobic004G063500 Sobic007G152400 Sobic007G152400 Sobic009G120100--Sobic007G152400 Sobic001G286300 Sobic001G286300 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic002G331300 Sobic002G331300 Sobic009G120100--Sobic002G331300 Sobic009G070200 Sobic009G070200 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic005G111100 Sobic005G111100 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic003G325700--Sobic004G063500 Sobic003G146400 Sobic003G146400 Sobic003G325700--Sobic003G146400 Sobic010G196800 Sobic010G196800 Sobic003G325700--Sobic010G196800 Sobic003G325700--Sobic002G113500 Sobic003G325700--Sobic003G063200 Sobic006G158200 Sobic006G158200 Sobic003G325700--Sobic006G158200 Sobic008G111500 Sobic008G111500 Sobic003G325700--Sobic008G111500 Sobic004G247200 Sobic004G247200 Sobic003G325700--Sobic004G247200 Sobic009G131400 Sobic009G131400 Sobic003G325700--Sobic009G131400 Sobic005G028700 Sobic005G028700 Sobic003G063200--Sobic005G028700 Sobic010G204600 Sobic010G204600 Sobic003G063200--Sobic010G204600 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic003G358300 Sobic003G358300 Sobic001G066700--Sobic003G358300 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic001G066700--Sobic010G266300 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200 Sobic008G134900 Sobic008G134900 Sobic010G266300--Sobic008G134900 Sobic010G266300--Sobic009G070200 Sobic010G266300--Sobic001G066700 Sobic010G266300--Sobic003G233500 Sobic010G008800 Sobic010G008800 Sobic010G266300--Sobic010G008800 Sobic010G266300--Sobic007G152400 Sobic010G266300--Sobic005G111100 Sobic001G224400 Sobic001G224400 Sobic010G266300--Sobic001G224400 Sobic004G204800 Sobic004G204800 Sobic010G266300--Sobic004G204800 Sobic002G372400 Sobic002G372400 Sobic009G216800--Sobic002G372400 Sobic002G348100 Sobic002G348100 Sobic009G216800--Sobic002G348100 Sobic003G078200 Sobic003G078200 Sobic009G216800--Sobic003G078200 Sobic002G251900 Sobic002G251900 Sobic009G216800--Sobic002G251900 Sobic008G186600 Sobic008G186600 Sobic009G216800--Sobic008G186600 Sobic004G055700 Sobic004G055700 Sobic009G216800--Sobic004G055700 Sobic006G136800 Sobic006G136800 Sobic009G216800--Sobic006G136800 Sobic001G403500 Sobic001G403500 Sobic009G216800--Sobic001G403500 Sobic003G109600 Sobic003G109600 Sobic009G216800--Sobic003G109600 Sobic001G389900 Sobic001G389900 Sobic003G403400--Sobic001G389900 Sobic003G403400--Sobic001G066700 Sobic003G403400--Sobic003G063200 Sobic003G403400--Sobic002G218000 Sobic003G403400--Sobic005G111100 Sobic003G350300 Sobic003G350300 Sobic003G403400--Sobic003G350300 Sobic003G403400--Sobic010G225300 Sobic009G232800 Sobic009G232800 Sobic003G403400--Sobic009G232800 Sobic004G265700 Sobic004G265700 Sobic003G403400--Sobic004G265700 Sobic001G154400 Sobic001G154400 Sobic002G113500--Sobic001G154400 Sobic002G113500--Sobic003G325700 Sobic002G113500--Sobic004G063500 Sobic002G239200 Sobic002G239200 Sobic002G113500--Sobic002G239200 Sobic001G399300 Sobic001G399300 Sobic002G113500--Sobic001G399300 Sobic002G113500--Sobic003G146400 Sobic010G030900 Sobic010G030900 Sobic002G113500--Sobic010G030900 Sobic004G102900 Sobic004G102900 Sobic002G113500--Sobic004G102900 Sobic002G113500--Sobic009G216800 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900
Octagon: transcription factors


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