Gene annotation
Transcriptome id Sobic.002G113500.1
Synonym RALFL22, Sb02g009700
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed
UniProt C5X4B0
Pfam PF05498
Panther DB PTHR33136 PTHR33136:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02900 : rapid alkalinization factor 1
RAP-DB (Rice) LOC_Os12g35670.1 : RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed
MaizeGDB (Corn) Zm00025a054344 , Zm00025a025531
Brachypodium KQK04278 , KQJ86440
Barley HORVU5Hr1G024410.1
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.002G113500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G154400 expp1 protein precursor, putative, expressed -
2 Sobic.003G325700 expressed protein -
3 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
4 Sobic.002G239200 zinc finger, C3HC4 type domain containing protein, expressed K16285: RING/U-box domain-containing protein
5 Sobic.001G399300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphotase protein, putative, expressed -
6 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
7 Sobic.010G030900 glycosyltransferase, putative, expressed -
8 Sobic.004G102900 FUWA(Ortholog in rice:Chen 2015)(PubMedID : 31659879)@"encodes an NHL domain-containing protein regulating panicle architecture, grain shape and grain weight"(PubMedID : 26043067)@NHL repeat-containing protein, putative, expressed -
9 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
10 Sobic.004G259600 slowmo homolog, putative, expressed -
11 Sobic.010G196800 OsFBX436 - F-box domain containing protein, expressed -
12 Sobic.003G295000 DUF584 domain containing protein, putative, expressed -
13 Sobic.010G201388 - -
14 Sobic.001G052300 expressed protein -
15 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
16 Sobic.010G101400 glycosyl transferase 8 domain containing protein, putative, expressed -
17 Sobic.007G216500 expressed protein -
18 Sobic.006G158200 lectin-like receptor kinase, putative, expressed -
19 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
20 Sobic.001G042500 expressed protein -


Gene co-expression network
sample Sobic002G113500 Sobic002G113500 Sobic001G154400 Sobic001G154400 Sobic002G113500--Sobic001G154400 Sobic003G325700 Sobic003G325700 Sobic002G113500--Sobic003G325700 Sobic004G063500 Sobic004G063500 Sobic002G113500--Sobic004G063500 Sobic002G239200 Sobic002G239200 Sobic002G113500--Sobic002G239200 Sobic001G399300 Sobic001G399300 Sobic002G113500--Sobic001G399300 Sobic003G146400 Sobic003G146400 Sobic002G113500--Sobic003G146400 Sobic010G030900 Sobic010G030900 Sobic002G113500--Sobic010G030900 Sobic004G102900 Sobic004G102900 Sobic002G113500--Sobic004G102900 Sobic009G216800 Sobic009G216800 Sobic002G113500--Sobic009G216800 Sobic001G154400--Sobic002G113500 Sobic006G013900 Sobic006G013900 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic001G154400--Sobic004G102900 Sobic004G318400 Sobic004G318400 Sobic001G154400--Sobic004G318400 Sobic002G051200 Sobic002G051200 Sobic001G154400--Sobic002G051200 Sobic001G154400--Sobic004G063500 Sobic010G256200 Sobic010G256200 Sobic001G154400--Sobic010G256200 Sobic001G154400--Sobic003G325700 Sobic003G325700--Sobic004G063500 Sobic003G325700--Sobic003G146400 Sobic010G196800 Sobic010G196800 Sobic003G325700--Sobic010G196800 Sobic003G325700--Sobic002G113500 Sobic003G063200 Sobic003G063200 Sobic003G325700--Sobic003G063200 Sobic006G158200 Sobic006G158200 Sobic003G325700--Sobic006G158200 Sobic008G111500 Sobic008G111500 Sobic003G325700--Sobic008G111500 Sobic004G247200 Sobic004G247200 Sobic003G325700--Sobic004G247200 Sobic009G131400 Sobic009G131400 Sobic003G325700--Sobic009G131400 Sobic009G120100 Sobic009G120100 Sobic004G063500--Sobic009G120100 Sobic004G063500--Sobic003G325700 Sobic004G063500--Sobic003G063200 Sobic001G066700 Sobic001G066700 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic004G063500--Sobic002G113500 Sobic006G231700 Sobic006G231700 Sobic004G063500--Sobic006G231700 Sobic006G165100 Sobic006G165100 Sobic002G239200--Sobic006G165100 Sobic001G052300 Sobic001G052300 Sobic002G239200--Sobic001G052300 Sobic002G239200--Sobic003G063200 Sobic002G359300 Sobic002G359300 Sobic002G239200--Sobic002G359300 Sobic005G028700 Sobic005G028700 Sobic002G239200--Sobic005G028700 Sobic002G239200--Sobic004G247200 Sobic004G117600 Sobic004G117600 Sobic002G239200--Sobic004G117600 Sobic009G255500 Sobic009G255500 Sobic002G239200--Sobic009G255500 Sobic009G179500 Sobic009G179500 Sobic002G239200--Sobic009G179500 Sobic001G042500 Sobic001G042500 Sobic001G399300--Sobic001G042500 Sobic001G399300--Sobic006G158200 Sobic007G195800 Sobic007G195800 Sobic001G399300--Sobic007G195800 Sobic006G159600 Sobic006G159600 Sobic001G399300--Sobic006G159600 Sobic001G429000 Sobic001G429000 Sobic001G399300--Sobic001G429000 Sobic001G399300--Sobic003G146400 Sobic002G348100 Sobic002G348100 Sobic001G399300--Sobic002G348100 Sobic001G399300--Sobic009G216800 Sobic001G399300--Sobic002G113500 Sobic003G146400--Sobic009G179500 Sobic009G184000 Sobic009G184000 Sobic003G146400--Sobic009G184000 Sobic004G306300 Sobic004G306300 Sobic003G146400--Sobic004G306300 Sobic007G074200 Sobic007G074200 Sobic003G146400--Sobic007G074200 Sobic003G432700 Sobic003G432700 Sobic003G146400--Sobic003G432700 Sobic006G007900 Sobic006G007900 Sobic003G146400--Sobic006G007900 Sobic003G146400--Sobic006G158200 Sobic001G079300 Sobic001G079300 Sobic003G146400--Sobic001G079300 Sobic006G235100 Sobic006G235100 Sobic003G146400--Sobic006G235100 Sobic004G257300 Sobic004G257300 Sobic010G030900--Sobic004G257300 Sobic002G248100 Sobic002G248100 Sobic010G030900--Sobic002G248100 Sobic001G476400 Sobic001G476400 Sobic010G030900--Sobic001G476400 Sobic003G150400 Sobic003G150400 Sobic010G030900--Sobic003G150400 Sobic009G184400 Sobic009G184400 Sobic010G030900--Sobic009G184400 Sobic003G296700 Sobic003G296700 Sobic010G030900--Sobic003G296700 Sobic001G051600 Sobic001G051600 Sobic010G030900--Sobic001G051600 Sobic001G173300 Sobic001G173300 Sobic010G030900--Sobic001G173300 Sobic007G180300 Sobic007G180300 Sobic010G030900--Sobic007G180300 Sobic004G102900--Sobic004G318400 Sobic007G208200 Sobic007G208200 Sobic004G102900--Sobic007G208200 Sobic001G050900 Sobic001G050900 Sobic004G102900--Sobic001G050900 Sobic004G102900--Sobic001G154400 Sobic006G066600 Sobic006G066600 Sobic004G102900--Sobic006G066600 Sobic002G240700 Sobic002G240700 Sobic004G102900--Sobic002G240700 Sobic003G304500 Sobic003G304500 Sobic004G102900--Sobic003G304500 Sobic007G194100 Sobic007G194100 Sobic004G102900--Sobic007G194100 Sobic004G102900--Sobic002G113500 Sobic002G372400 Sobic002G372400 Sobic009G216800--Sobic002G372400 Sobic009G216800--Sobic002G348100 Sobic003G078200 Sobic003G078200 Sobic009G216800--Sobic003G078200 Sobic002G251900 Sobic002G251900 Sobic009G216800--Sobic002G251900 Sobic008G186600 Sobic008G186600 Sobic009G216800--Sobic008G186600 Sobic004G055700 Sobic004G055700 Sobic009G216800--Sobic004G055700 Sobic006G136800 Sobic006G136800 Sobic009G216800--Sobic006G136800 Sobic001G403500 Sobic001G403500 Sobic009G216800--Sobic001G403500 Sobic003G109600 Sobic003G109600 Sobic009G216800--Sobic003G109600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.