Gene annotation
Transcriptome id Sobic.001G399300.1
Synonym Sb01g037810
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
protein phosphotase protein, putative, expressed
UniProt C5WMK7
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF158
NCBI CDD KOG0698; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT1G09160 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os03g18970.1 : protein phosphotase protein, putative, expressed
MaizeGDB (Corn) Zm00025a052606 , Zm00025a015498 , Zm00025a049239
Brachypodium KQK14517 , KQK22047 , KQK14516 , KQK14514 , PNT74534 , PNT74533
Barley HORVU2Hr1G015470.3 , HORVU2Hr1G015470.2 , HORVU2Hr1G015470.1 , HORVU2Hr1G015470.5 , HORVU2Hr1G015470.4 , HORVU4Hr1G054610.3 , HORVU4Hr1G054610.4 , HORVU4Hr1G054610.5 , HORVU4Hr1G054610.8 , HORVU4Hr1G054610.2 , HORVU4Hr1G054610.1 , HORVU2Hr1G015480.2 , HORVU2Hr1G015480.1 , HORVU5Hr1G067020.2
Wheat TraesCS2D02G092500 , TraesCS4D02G188100 , TraesCS2B02G108200 , TraesCS2A02G093700 , TraesCS2A02G093700 , TraesCS2A02G093700 , TraesCS2A02G093700 , TraesCS4A02G117600 , TraesCS4A02G117600 , TraesCS4D02G188100 , TraesCS4D02G188100 , TraesCS4B02G186800
Populus -


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cDNA sequences
Sobic.001G399300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G042500 expressed protein -
2 Sobic.006G158200 lectin-like receptor kinase, putative, expressed -
3 Sobic.007G195800 uncharacterized protein family UPF0016 domain containing protein, expressed -
4 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
5 Sobic.001G429000 harpin-induced protein 1 domain containing protein, expressed -
6 Sobic.003G146400 anther-specific protein SF18 precursor, putative, expressed -
7 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
8 Sobic.009G216800 polyprenyl synthetase, putative, expressed K00787: farnesyl diphosphate synthase
9 Sobic.002G113500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
10 Sobic.001G429500 phosphatidylinositol-4-phosphate 5-kinase, putative, expressed -
11 Sobic.010G076400 40S ribosomal protein S17, putative, expressed K02962: RP-S17e, small subunit ribosomal protein S17e
12 Sobic.009G179500 expressed protein -
13 Sobic.003G379600 methyltransferase, putative, expressed -
14 Sobic.001G475500 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
15 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
16 Sobic.001G371900 copper/zinc superoxide dismutase(PubMedID : 23915383)@copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
17 Sobic.001G154400 expp1 protein precursor, putative, expressed -
18 Sobic.006G137800 expressed protein -
19 Sobic.002G372400 60S ribosomal protein, putative, expressed K02900: RP-L27Ae, large subunit ribosomal protein L27Ae
20 Sobic.006G191800 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11254: histone H4


Gene co-expression network
sample Sobic001G399300 Sobic001G399300 Sobic001G042500 Sobic001G042500 Sobic001G399300--Sobic001G042500 Sobic006G158200 Sobic006G158200 Sobic001G399300--Sobic006G158200 Sobic007G195800 Sobic007G195800 Sobic001G399300--Sobic007G195800 Sobic006G159600 Sobic006G159600 Sobic001G399300--Sobic006G159600 Sobic001G429000 Sobic001G429000 Sobic001G399300--Sobic001G429000 Sobic003G146400 Sobic003G146400 Sobic001G399300--Sobic003G146400 Sobic002G348100 Sobic002G348100 Sobic001G399300--Sobic002G348100 Sobic009G216800 Sobic009G216800 Sobic001G399300--Sobic009G216800 Sobic002G113500 Sobic002G113500 Sobic001G399300--Sobic002G113500 Sobic001G042500--Sobic001G399300 Sobic001G042500--Sobic003G146400 Sobic001G042500--Sobic006G158200 Sobic001G042500--Sobic002G113500 Sobic001G347901 Sobic001G347901 Sobic001G042500--Sobic001G347901 Sobic009G179500 Sobic009G179500 Sobic001G042500--Sobic009G179500 Sobic003G325700 Sobic003G325700 Sobic001G042500--Sobic003G325700 Sobic007G074200 Sobic007G074200 Sobic001G042500--Sobic007G074200 Sobic001G042500--Sobic002G348100 Sobic006G158266 Sobic006G158266 Sobic006G158200--Sobic006G158266 Sobic006G158200--Sobic003G146400 Sobic004G306300 Sobic004G306300 Sobic006G158200--Sobic004G306300 Sobic006G158200--Sobic006G159600 Sobic001G322200 Sobic001G322200 Sobic006G158200--Sobic001G322200 Sobic006G158200--Sobic001G399300 Sobic001G371900 Sobic001G371900 Sobic006G158200--Sobic001G371900 Sobic006G263600 Sobic006G263600 Sobic006G158200--Sobic006G263600 Sobic001G055600 Sobic001G055600 Sobic006G158200--Sobic001G055600 Sobic006G137800 Sobic006G137800 Sobic007G195800--Sobic006G137800 Sobic008G139600 Sobic008G139600 Sobic007G195800--Sobic008G139600 Sobic001G502900 Sobic001G502900 Sobic007G195800--Sobic001G502900 Sobic002G389400 Sobic002G389400 Sobic007G195800--Sobic002G389400 Sobic006G191800 Sobic006G191800 Sobic007G195800--Sobic006G191800 Sobic002G323300 Sobic002G323300 Sobic007G195800--Sobic002G323300 Sobic004G065500 Sobic004G065500 Sobic007G195800--Sobic004G065500 Sobic001G115300 Sobic001G115300 Sobic007G195800--Sobic001G115300 Sobic005G113300 Sobic005G113300 Sobic007G195800--Sobic005G113300 Sobic006G159600--Sobic006G137800 Sobic006G159600--Sobic002G348100 Sobic003G125650 Sobic003G125650 Sobic006G159600--Sobic003G125650 Sobic006G067800 Sobic006G067800 Sobic006G159600--Sobic006G067800 Sobic004G321300 Sobic004G321300 Sobic006G159600--Sobic004G321300 Sobic008G025600 Sobic008G025600 Sobic006G159600--Sobic008G025600 Sobic007G197800 Sobic007G197800 Sobic006G159600--Sobic007G197800 Sobic009G159400 Sobic009G159400 Sobic006G159600--Sobic009G159400 Sobic001G464900 Sobic001G464900 Sobic006G159600--Sobic001G464900 Sobic001G429500 Sobic001G429500 Sobic001G429000--Sobic001G429500 Sobic001G429000--Sobic001G399300 Sobic009G165500 Sobic009G165500 Sobic001G429000--Sobic009G165500 Sobic009G157600 Sobic009G157600 Sobic001G429000--Sobic009G157600 Sobic006G200000 Sobic006G200000 Sobic001G429000--Sobic006G200000 Sobic001G505000 Sobic001G505000 Sobic001G429000--Sobic001G505000 Sobic001G261549 Sobic001G261549 Sobic001G429000--Sobic001G261549 Sobic003G423000 Sobic003G423000 Sobic001G429000--Sobic003G423000 Sobic009G194900 Sobic009G194900 Sobic001G429000--Sobic009G194900 Sobic003G146400--Sobic009G179500 Sobic009G184000 Sobic009G184000 Sobic003G146400--Sobic009G184000 Sobic003G146400--Sobic004G306300 Sobic003G146400--Sobic007G074200 Sobic003G432700 Sobic003G432700 Sobic003G146400--Sobic003G432700 Sobic006G007900 Sobic006G007900 Sobic003G146400--Sobic006G007900 Sobic003G146400--Sobic006G158200 Sobic001G079300 Sobic001G079300 Sobic003G146400--Sobic001G079300 Sobic006G235100 Sobic006G235100 Sobic003G146400--Sobic006G235100 Sobic002G372400 Sobic002G372400 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100 Sobic009G216800--Sobic002G372400 Sobic009G216800--Sobic002G348100 Sobic009G216800--Sobic003G078200 Sobic002G251900 Sobic002G251900 Sobic009G216800--Sobic002G251900 Sobic008G186600 Sobic008G186600 Sobic009G216800--Sobic008G186600 Sobic004G055700 Sobic004G055700 Sobic009G216800--Sobic004G055700 Sobic006G136800 Sobic006G136800 Sobic009G216800--Sobic006G136800 Sobic001G403500 Sobic001G403500 Sobic009G216800--Sobic001G403500 Sobic003G109600 Sobic003G109600 Sobic009G216800--Sobic003G109600 Sobic001G154400 Sobic001G154400 Sobic002G113500--Sobic001G154400 Sobic002G113500--Sobic003G325700 Sobic004G063500 Sobic004G063500 Sobic002G113500--Sobic004G063500 Sobic002G239200 Sobic002G239200 Sobic002G113500--Sobic002G239200 Sobic002G113500--Sobic001G399300 Sobic002G113500--Sobic003G146400 Sobic010G030900 Sobic010G030900 Sobic002G113500--Sobic010G030900 Sobic004G102900 Sobic004G102900 Sobic002G113500--Sobic004G102900 Sobic002G113500--Sobic009G216800
Octagon: transcription factors


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