Gene annotation
| Transcriptome id | Sobic.001G371900.1,Sobic.001G371900.2 |
|---|---|
| Synonym | Sb01g035350, CSD1 |
| Functional annotation | copper/zinc superoxide dismutase (PubMedID : 23915383) copper/zinc superoxide dismutase, putative, expressed |
| UniProt | A0A1B6QN96 |
| Pfam | PF00080 |
| Panther DB | PTHR10003 |
| NCBI CDD | KOG0441; Cu2+/Zn2+ superoxide dismutase SOD1 |
| KEGG Orthology | K04565; superoxide dismutase, Cu-Zn family |
| Gene Ontology | GO:0006801; superoxide metabolic process |
Orthologs (automatic annotation)
| TAIR | AT1G08830 : copper/zinc superoxide dismutase 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g22810.1 : copper/zinc superoxide dismutase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a052377 , Zm00025a002473 |
| Brachypodium | KQK14729 , KQK14730 |
| Barley | HORVU2Hr1G021110.3 , HORVU2Hr1G021110.2 , HORVU2Hr1G021110.1 , HORVU2Hr1G021110.6 , HORVU2Hr1G021110.5 , HORVU2Hr1G021110.4 , HORVU5Hr1G066930.1 , HORVU5Hr1G066230.1 , HORVU5Hr1G066230.2 |
| Wheat | TraesCS2A02G121200 , TraesCS2A02G121200 , TraesCS2D02G123300 |
| Populus | - |
JBrowse
| Sobic.001G371900 |
Expression pattern by RNA-Seq analysis
 |
Find similar expressed genes
 |
| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G407900 | copper/zinc superoxide dismutase, putative, expressed | K04565: superoxide dismutase, Cu-Zn family |
| 2 | Sobic.006G137800 | expressed protein | - |
| 3 | Sobic.003G072300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 4 | Sobic.007G195800 | uncharacterized protein family UPF0016 domain containing protein, expressed | - |
| 5 | Sobic.004G065500 | chorismate mutase, chloroplast precursor, putative, expressed | K01850: chorismate mutase |
| 6 | Sobic.003G357300 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 7 | Sobic.002G389400 | OsRCI2-10 - Hydrophobic protein LTI6A, expressed | - |
| 8 | Sobic.006G159600 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
| 9 | Sobic.004G306300 | expressed protein | - |
| 10 | Sobic.009G242300 | 60S acidic ribosomal protein, putative, expressed | K02943: RP-LP2, large subunit ribosomal protein LP2 |
| 11 | Sobic.002G348100 | 40S ribosomal protein S13, putative, expressed | K02953: RP-S13e, small subunit ribosomal protein S13e |
| 12 | Sobic.003G125650 | - | K02183: calmodulin |
| 13 | Sobic.010G086200 | GRAM domain containing protein, expressed | - |
| 14 | Sobic.001G055600 | prenylated rab acceptor, putative, expressed | - |
| 15 | Sobic.006G267200 | pyruvate kinase, putative, expressed | K00873: PK, pyruvate kinase |
| 16 | Sobic.001G405500 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate decarboxylase isozyme 2, putative, expressed | K01568: PDC, pyruvate decarboxylase |
| 17 | Sobic.004G321300 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 18 | Sobic.001G477600 | zinc finger protein, putative, expressed | - |
| 19 | Sobic.003G393900 | Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed | K01623: fructose-bisphosphate aldolase, class I |
| 20 | Sobic.007G197800 | 60S ribosomal protein L32, putative, expressed | K02912: RP-L32e, large subunit ribosomal protein L32e |
Gene co-expression network
Octagon: transcription factors
© 2015- RIKEN, All rights reserved.
