Gene annotation
Transcriptome id Sobic.002G407900.3,Sobic.002G407900.1,Sobic.002G407900.2
Synonym Sb02g042170, CSD1
Functional annotation copper/zinc superoxide dismutase, putative, expressed
UniProt A0A1B6QG56 , A0A1B6QG28
Pfam PF00080
Panther DB PTHR10003
NCBI CDD KOG0441; Cu2+/Zn2+ superoxide dismutase SOD1
KEGG Orthology K04565; superoxide dismutase, Cu-Zn family
Gene Ontology GO:0006801; superoxide metabolic process


Orthologs (automatic annotation)
TAIR AT1G08830 : copper/zinc superoxide dismutase 1
RAP-DB (Rice) LOC_Os07g46990.2,LOC_Os07g46990.1 : copper/zinc superoxide dismutase, putative, expressed
MaizeGDB (Corn) Zm00025a002473 , Zm00025a049066
Brachypodium KQK14729 , KQK14730
Barley HORVU2Hr1G021110.3 , HORVU2Hr1G021110.2 , HORVU2Hr1G021110.1 , HORVU2Hr1G021110.6 , HORVU2Hr1G021110.5 , HORVU2Hr1G021110.4 , HORVU5Hr1G066930.1 , HORVU5Hr1G066230.1 , HORVU5Hr1G066230.2
Wheat TraesCS2D02G123300
Populus -


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cDNA sequences
Sobic.002G407900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
2 Sobic.003G125650 - K02183: calmodulin
3 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
4 Sobic.001G402050 - K02979: RP-S28e, small subunit ribosomal protein S28e
5 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
6 Sobic.002G336600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
7 Sobic.001G046100 ribosomal protein, putative, expressed K02981: RP-S2e, small subunit ribosomal protein S2e
8 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
9 Sobic.001G477600 zinc finger protein, putative, expressed -
10 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
11 Sobic.007G197800 60S ribosomal protein L32, putative, expressed K02912: RP-L32e, large subunit ribosomal protein L32e
12 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
13 Sobic.002G200600 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
14 Sobic.004G306300 expressed protein -
15 Sobic.007G018300 60S acidic ribosomal protein, putative, expressed K02942: RP-LP1, large subunit ribosomal protein LP1
16 Sobic.009G215200 60S ribosomal protein L28-1, putative, expressed K02903: RP-L28e, large subunit ribosomal protein L28e
17 Sobic.007G051000 mitochondrial NADH-ubiquinone oxidoreductase, putative, expressed K03939: NADH dehydrogenase (ubiquinone) Fe-S protein 6
18 Sobic.001G018900 40S ribosomal protein S4, putative, expressed K02987: RP-S4e, small subunit ribosomal protein S4e
19 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
20 Sobic.003G043600 BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic002G407900 Sobic002G407900 Sobic001G055600 Sobic001G055600 Sobic002G407900--Sobic001G055600 Sobic003G125650 Sobic003G125650 Sobic002G407900--Sobic003G125650 Sobic001G390300 Sobic001G390300 Sobic002G407900--Sobic001G390300 Sobic001G402050 Sobic001G402050 Sobic002G407900--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic002G407900--Sobic001G016400 Sobic002G336600 Sobic002G336600 Sobic002G407900--Sobic002G336600 Sobic001G046100 Sobic001G046100 Sobic002G407900--Sobic001G046100 Sobic010G204500 Sobic010G204500 Sobic002G407900--Sobic010G204500 Sobic001G477600 Sobic001G477600 Sobic002G407900--Sobic001G477600 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic004G065500 Sobic004G065500 Sobic001G055600--Sobic004G065500 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic007G197800 Sobic007G197800 Sobic003G125650--Sobic007G197800 Sobic001G130301 Sobic001G130301 Sobic003G125650--Sobic001G130301 Sobic001G018900 Sobic001G018900 Sobic003G125650--Sobic001G018900 Sobic003G125650--Sobic001G402050 Sobic003G125650--Sobic001G390300 Sobic006G116700 Sobic006G116700 Sobic003G125650--Sobic006G116700 Sobic001G493001 Sobic001G493001 Sobic003G125650--Sobic001G493001 Sobic002G200600 Sobic002G200600 Sobic003G125650--Sobic002G200600 Sobic009G050300 Sobic009G050300 Sobic003G125650--Sobic009G050300 Sobic001G390300--Sobic003G125650 Sobic001G390300--Sobic001G046100 Sobic001G390300--Sobic001G055600 Sobic001G390300--Sobic001G402050 Sobic001G374700 Sobic001G374700 Sobic001G390300--Sobic001G374700 Sobic001G390300--Sobic001G493001 Sobic005G196800 Sobic005G196800 Sobic001G390300--Sobic005G196800 Sobic002G375100 Sobic002G375100 Sobic001G390300--Sobic002G375100 Sobic001G367600 Sobic001G367600 Sobic001G390300--Sobic001G367600 Sobic001G402050--Sobic002G200600 Sobic001G402050--Sobic001G374700 Sobic007G184600 Sobic007G184600 Sobic001G402050--Sobic007G184600 Sobic001G402050--Sobic007G197800 Sobic006G067800 Sobic006G067800 Sobic001G402050--Sobic006G067800 Sobic001G402050--Sobic001G016400 Sobic009G215200 Sobic009G215200 Sobic001G402050--Sobic009G215200 Sobic001G402050--Sobic001G130301 Sobic001G402050--Sobic001G493001 Sobic001G016400--Sobic009G050300 Sobic001G016400--Sobic009G215200 Sobic001G016400--Sobic001G018900 Sobic001G016400--Sobic006G116700 Sobic001G016400--Sobic007G197800 Sobic001G016400--Sobic001G402050 Sobic007G018300 Sobic007G018300 Sobic001G016400--Sobic007G018300 Sobic001G403500 Sobic001G403500 Sobic001G016400--Sobic001G403500 Sobic002G081600 Sobic002G081600 Sobic001G016400--Sobic002G081600 Sobic004G237800 Sobic004G237800 Sobic002G336600--Sobic004G237800 Sobic002G336600--Sobic007G074000 Sobic004G208700 Sobic004G208700 Sobic002G336600--Sobic004G208700 Sobic004G229800 Sobic004G229800 Sobic002G336600--Sobic004G229800 Sobic003G369100 Sobic003G369100 Sobic002G336600--Sobic003G369100 Sobic001G435000 Sobic001G435000 Sobic002G336600--Sobic001G435000 Sobic002G140400 Sobic002G140400 Sobic002G336600--Sobic002G140400 Sobic004G141200 Sobic004G141200 Sobic002G336600--Sobic004G141200 Sobic003G345100 Sobic003G345100 Sobic002G336600--Sobic003G345100 Sobic001G046100--Sobic001G374700 Sobic001G046100--Sobic001G390300 Sobic001G046100--Sobic001G402050 Sobic002G175100 Sobic002G175100 Sobic001G046100--Sobic002G175100 Sobic003G322400 Sobic003G322400 Sobic001G046100--Sobic003G322400 Sobic006G047400 Sobic006G047400 Sobic001G046100--Sobic006G047400 Sobic001G046100--Sobic007G197800 Sobic001G177800 Sobic001G177800 Sobic001G046100--Sobic001G177800 Sobic001G091801 Sobic001G091801 Sobic001G046100--Sobic001G091801 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic009G180000 Sobic009G180000 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic010G204500--Sobic002G081600 Sobic010G204500--Sobic009G215200 Sobic010G204500--Sobic001G018900 Sobic001G138600 Sobic001G138600 Sobic001G477600--Sobic001G138600 Sobic001G112200 Sobic001G112200 Sobic001G477600--Sobic001G112200 Sobic001G477600--Sobic003G369100 Sobic001G477600--Sobic002G336600 Sobic003G382800 Sobic003G382800 Sobic001G477600--Sobic003G382800 Sobic001G477600--Sobic007G074000 Sobic001G477600--Sobic003G345100 Sobic005G099000 Sobic005G099000 Sobic001G477600--Sobic005G099000 Sobic001G477600--Sobic004G141200
Octagon: transcription factors


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