Gene annotation
Transcriptome id Sobic.003G063200.1
Synonym Sb03g005390
Functional annotation uncharacterized Cys-rich domain containing protein, putative, expressed
UniProt C5XP89
Pfam PF04749
Panther DB PTHR15907 PTHR15907:SF58
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G37110 : PLAC8 family protein
RAP-DB (Rice) LOC_Os01g06460.1 : uncharacterized Cys-rich domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a023361
Brachypodium -
Barley HORVU3Hr1G025590.1
Wheat TraesCS3A02G309800 , TraesCS3B02G152800 , TraesCS3B02G152800
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G063200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
2 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
3 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
4 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
5 Sobic.001G037000 PHD finger protein, putative, expressed -
6 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
7 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
8 Sobic.004G306300 expressed protein -
9 Sobic.002G407900 copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family
10 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
11 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
12 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
13 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
14 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
15 Sobic.005G196800 membrane protein, putative, expressed -
16 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
17 Sobic.010G086200 GRAM domain containing protein, expressed -
18 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
19 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
20 Sobic.001G536500 expressed protein -


Gene co-expression network
sample Sobic003G063200 Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic003G063200--Sobic005G028700 Sobic010G204600 Sobic010G204600 Sobic003G063200--Sobic010G204600 Sobic004G247200 Sobic004G247200 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic005G028700--Sobic003G063200 Sobic009G129000 Sobic009G129000 Sobic005G028700--Sobic009G129000 Sobic010G086200 Sobic010G086200 Sobic005G028700--Sobic010G086200 Sobic004G065500 Sobic004G065500 Sobic005G028700--Sobic004G065500 Sobic005G028700--Sobic004G247200 Sobic007G151100 Sobic007G151100 Sobic005G028700--Sobic007G151100 Sobic002G356101 Sobic002G356101 Sobic005G028700--Sobic002G356101 Sobic001G477300 Sobic001G477300 Sobic005G028700--Sobic001G477300 Sobic005G028700--Sobic004G306300 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic010G204600--Sobic003G063200 Sobic002G405600 Sobic002G405600 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic010G204600--Sobic009G023200 Sobic010G204600--Sobic009G129000 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic004G247200--Sobic003G063200 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic004G247200--Sobic001G055600 Sobic004G247200--Sobic010G204600 Sobic004G247200--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic001G055600--Sobic004G065500 Sobic002G336600 Sobic002G336600 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic003G249800 Sobic003G249800 Sobic001G037000--Sobic003G249800 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic001G037000--Sobic010G204600 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic003G181500 Sobic003G181500 Sobic001G037000--Sobic003G181500 Sobic004G187900 Sobic004G187900 Sobic009G023200--Sobic004G187900 Sobic009G023200--Sobic010G204600 Sobic009G023200--Sobic003G063200 Sobic009G023200--Sobic001G067601 Sobic002G046100 Sobic002G046100 Sobic009G023200--Sobic002G046100 Sobic002G245800 Sobic002G245800 Sobic009G023200--Sobic002G245800 Sobic009G023200--Sobic003G181500 Sobic009G023200--Sobic003G202200 Sobic005G196800 Sobic005G196800 Sobic009G023200--Sobic005G196800 Sobic003G125650 Sobic003G125650 Sobic001G390300--Sobic003G125650 Sobic001G046100 Sobic001G046100 Sobic001G390300--Sobic001G046100 Sobic001G390300--Sobic001G055600 Sobic001G402050 Sobic001G402050 Sobic001G390300--Sobic001G402050 Sobic001G374700 Sobic001G374700 Sobic001G390300--Sobic001G374700 Sobic001G493001 Sobic001G493001 Sobic001G390300--Sobic001G493001 Sobic001G390300--Sobic005G196800 Sobic002G375100 Sobic002G375100 Sobic001G390300--Sobic002G375100 Sobic001G367600 Sobic001G367600 Sobic001G390300--Sobic001G367600 Sobic004G306300--Sobic004G065500 Sobic001G459800 Sobic001G459800 Sobic004G306300--Sobic001G459800 Sobic003G393900 Sobic003G393900 Sobic004G306300--Sobic003G393900 Sobic001G138600 Sobic001G138600 Sobic004G306300--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic004G306300--Sobic003G369100 Sobic004G321300 Sobic004G321300 Sobic004G306300--Sobic004G321300 Sobic006G267200 Sobic006G267200 Sobic004G306300--Sobic006G267200 Sobic004G141200 Sobic004G141200 Sobic004G306300--Sobic004G141200 Sobic004G306300--Sobic001G055600 Sobic002G407900--Sobic001G055600 Sobic002G407900--Sobic003G125650 Sobic002G407900--Sobic001G390300 Sobic002G407900--Sobic001G402050 Sobic001G016400 Sobic001G016400 Sobic002G407900--Sobic001G016400 Sobic002G407900--Sobic002G336600 Sobic002G407900--Sobic001G046100 Sobic010G204500 Sobic010G204500 Sobic002G407900--Sobic010G204500 Sobic001G477600 Sobic001G477600 Sobic002G407900--Sobic001G477600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.