Gene annotation
Transcriptome id Sobic.004G247200.1
Synonym Sb04g028710
Functional annotation erwinia induced protein 2, putative, expressed
UniProt C5XZA1
Pfam -
Panther DB PTHR12701 PTHR12701:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0006886intracellular protein transport GO:0005783endoplasmic reticulum


Orthologs (automatic annotation)
TAIR AT5G17190 : -
RAP-DB (Rice) LOC_Os02g50210.1 : erwinia induced protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a032672 , Zm00025a021947
Brachypodium KQK02041
Barley HORVU6Hr1G073910.1 , HORVU6Hr1G073910.2
Wheat -
Populus -


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cDNA sequences
Sobic.004G247200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
2 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
3 Sobic.004G259600 slowmo homolog, putative, expressed -
4 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
5 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
6 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
7 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
8 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
9 Sobic.002G348100 40S ribosomal protein S13, putative, expressed K02953: RP-S13e, small subunit ribosomal protein S13e
10 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
11 Sobic.010G086200 GRAM domain containing protein, expressed -
12 Sobic.004G306300 expressed protein -
13 Sobic.009G232900 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
14 Sobic.001G037000 PHD finger protein, putative, expressed -
15 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -
16 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
17 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
18 Sobic.005G228900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
19 Sobic.001G019900 zinc finger, C3HC4 type domain containing protein, expressed K15707: RING finger protein 170
20 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase


Gene co-expression network
sample Sobic004G247200 Sobic004G247200 Sobic003G063200 Sobic003G063200 Sobic004G247200--Sobic003G063200 Sobic005G028700 Sobic005G028700 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic001G055600 Sobic001G055600 Sobic004G247200--Sobic001G055600 Sobic010G204600 Sobic010G204600 Sobic004G247200--Sobic010G204600 Sobic004G065500 Sobic004G065500 Sobic004G247200--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100 Sobic003G063200--Sobic005G028700 Sobic003G063200--Sobic010G204600 Sobic003G063200--Sobic004G247200 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic005G028700--Sobic003G063200 Sobic009G129000 Sobic009G129000 Sobic005G028700--Sobic009G129000 Sobic010G086200 Sobic010G086200 Sobic005G028700--Sobic010G086200 Sobic005G028700--Sobic004G065500 Sobic005G028700--Sobic004G247200 Sobic007G151100 Sobic007G151100 Sobic005G028700--Sobic007G151100 Sobic002G356101 Sobic002G356101 Sobic005G028700--Sobic002G356101 Sobic001G477300 Sobic001G477300 Sobic005G028700--Sobic001G477300 Sobic005G028700--Sobic004G306300 Sobic004G259600--Sobic004G247200 Sobic004G259600--Sobic002G348100 Sobic004G259600--Sobic003G063200 Sobic005G168100 Sobic005G168100 Sobic004G259600--Sobic005G168100 Sobic004G259600--Sobic001G055600 Sobic009G232900 Sobic009G232900 Sobic004G259600--Sobic009G232900 Sobic002G372400 Sobic002G372400 Sobic004G259600--Sobic002G372400 Sobic004G259600--Sobic010G204600 Sobic004G259600--Sobic005G028700 Sobic001G055600--Sobic001G390300 Sobic007G074000 Sobic007G074000 Sobic001G055600--Sobic007G074000 Sobic001G055600--Sobic002G407900 Sobic009G159400 Sobic009G159400 Sobic001G055600--Sobic009G159400 Sobic001G481100 Sobic001G481100 Sobic001G055600--Sobic001G481100 Sobic001G055600--Sobic004G065500 Sobic002G336600 Sobic002G336600 Sobic001G055600--Sobic002G336600 Sobic003G228900 Sobic003G228900 Sobic001G055600--Sobic003G228900 Sobic009G247900 Sobic009G247900 Sobic001G055600--Sobic009G247900 Sobic001G095300 Sobic001G095300 Sobic010G204600--Sobic001G095300 Sobic010G204600--Sobic003G063200 Sobic002G405600 Sobic002G405600 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic010G204600--Sobic009G023200 Sobic010G204600--Sobic009G129000 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic009G033700 Sobic009G033700 Sobic010G204600--Sobic009G033700 Sobic006G267200 Sobic006G267200 Sobic004G065500--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G065500--Sobic001G459800 Sobic003G393900 Sobic003G393900 Sobic004G065500--Sobic003G393900 Sobic004G065500--Sobic007G074000 Sobic004G065500--Sobic010G086200 Sobic004G065500--Sobic004G306300 Sobic004G065500--Sobic003G228900 Sobic004G321300 Sobic004G321300 Sobic004G065500--Sobic004G321300 Sobic004G065500--Sobic009G247900 Sobic009G183300--Sobic004G065500 Sobic003G387000 Sobic003G387000 Sobic009G183300--Sobic003G387000 Sobic009G183300--Sobic010G086200 Sobic007G107850 Sobic007G107850 Sobic009G183300--Sobic007G107850 Sobic009G183300--Sobic009G129000 Sobic006G231100 Sobic006G231100 Sobic009G183300--Sobic006G231100 Sobic009G183300--Sobic006G267200 Sobic006G231200 Sobic006G231200 Sobic009G183300--Sobic006G231200 Sobic008G177800 Sobic008G177800 Sobic009G183300--Sobic008G177800 Sobic001G019900 Sobic001G019900 Sobic001G067601--Sobic001G019900 Sobic001G067601--Sobic009G023200 Sobic002G046100 Sobic002G046100 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic001G067601--Sobic003G063200 Sobic001G067601--Sobic001G037000 Sobic005G228000 Sobic005G228000 Sobic001G067601--Sobic005G228000 Sobic003G181500 Sobic003G181500 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic002G348100--Sobic002G372400 Sobic001G175300 Sobic001G175300 Sobic002G348100--Sobic001G175300 Sobic003G078200 Sobic003G078200 Sobic002G348100--Sobic003G078200 Sobic002G348100--Sobic001G055600 Sobic009G242300 Sobic009G242300 Sobic002G348100--Sobic009G242300 Sobic006G137800 Sobic006G137800 Sobic002G348100--Sobic006G137800 Sobic009G054800 Sobic009G054800 Sobic002G348100--Sobic009G054800 Sobic004G198400 Sobic004G198400 Sobic002G348100--Sobic004G198400 Sobic004G055100 Sobic004G055100 Sobic002G348100--Sobic004G055100
Octagon: transcription factors


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