Gene annotation
Transcriptome id Sobic.005G228900.1
Synonym Sb05g027690
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
glucan endo-1,3-beta-glucosidase precursor, putative, expressed
UniProt C5Y8K8
Pfam PF07983 PF00332
Panther DB PTHR32227 PTHR32227:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24318 : O-Glycosyl hydrolases family 17 protein
RAP-DB (Rice) LOC_Os11g47820.1 : glucan endo-1,3-beta-glucosidase precursor, putative, expressed
MaizeGDB (Corn) Zm00025a012813
Brachypodium KQJ87061 , KQJ87060
Barley HORVU4Hr1G027740.6 , HORVU4Hr1G027740.4 , HORVU4Hr1G027740.5 , HORVU4Hr1G027740.2 , HORVU4Hr1G027740.3 , HORVU4Hr1G027740.1
Wheat TraesCS4D02G136800 , TraesCS4A02G175900 , TraesCS4A02G175900 , TraesCS4A02G175900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
2 Sobic.002G356101 - -
3 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
4 Sobic.005G028700 peflin, putative, expressed K13448: calcium-binding protein CML
5 Sobic.001G399100 peroxisomal biogenesis factor 11, putative, expressed -
6 Sobic.001G538866 - -
7 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
8 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
9 Sobic.001G464900 "Ca ATPase, IIB type"(PubMedID : 22196357)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@calcium-transporting ATPase, plasma membrane-type, putative, expressed K01537: P-type Ca2+ transporter type 2C
10 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
11 Sobic.004G186500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
12 Sobic.008G161000 protein kinase domain containing protein, expressed -
13 Sobic.006G158266 - -
14 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
15 Sobic.001G095300 prenylated rab acceptor, putative, expressed -
16 Sobic.003G150000 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
17 Sobic.010G267600 similar to Putative senescence-associated protein(PubMedID : 29862293)@senescence-associated protein, putative, expressed -
18 Sobic.006G165100 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
19 Sobic.003G092900 expressed protein -
20 Sobic.003G037800 transferase family protein, putative, expressed -


Gene co-expression network
sample Sobic005G228900 Sobic005G228900 Sobic007G151100 Sobic007G151100 Sobic005G228900--Sobic007G151100 Sobic002G356101 Sobic002G356101 Sobic005G228900--Sobic002G356101 Sobic004G247200 Sobic004G247200 Sobic005G228900--Sobic004G247200 Sobic005G028700 Sobic005G028700 Sobic005G228900--Sobic005G028700 Sobic001G399100 Sobic001G399100 Sobic005G228900--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic005G228900--Sobic001G538866 Sobic003G063200 Sobic003G063200 Sobic005G228900--Sobic003G063200 Sobic009G033700 Sobic009G033700 Sobic005G228900--Sobic009G033700 Sobic001G464900 Sobic001G464900 Sobic005G228900--Sobic001G464900 Sobic001G516600 Sobic001G516600 Sobic007G151100--Sobic001G516600 Sobic003G158500 Sobic003G158500 Sobic007G151100--Sobic003G158500 Sobic007G151100--Sobic002G356101 Sobic007G151100--Sobic001G538866 Sobic007G151100--Sobic005G028700 Sobic002G140300 Sobic002G140300 Sobic007G151100--Sobic002G140300 Sobic002G245100 Sobic002G245100 Sobic007G151100--Sobic002G245100 Sobic001G513700 Sobic001G513700 Sobic007G151100--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic007G151100--Sobic002G036100 Sobic010G086200 Sobic010G086200 Sobic002G356101--Sobic010G086200 Sobic007G074000 Sobic007G074000 Sobic002G356101--Sobic007G074000 Sobic004G065500 Sobic004G065500 Sobic002G356101--Sobic004G065500 Sobic001G247300 Sobic001G247300 Sobic002G356101--Sobic001G247300 Sobic009G247900 Sobic009G247900 Sobic002G356101--Sobic009G247900 Sobic003G430400 Sobic003G430400 Sobic002G356101--Sobic003G430400 Sobic009G184000 Sobic009G184000 Sobic002G356101--Sobic009G184000 Sobic005G196800 Sobic005G196800 Sobic002G356101--Sobic005G196800 Sobic009G200700 Sobic009G200700 Sobic002G356101--Sobic009G200700 Sobic004G247200--Sobic003G063200 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic001G055600 Sobic001G055600 Sobic004G247200--Sobic001G055600 Sobic010G204600 Sobic010G204600 Sobic004G247200--Sobic010G204600 Sobic004G247200--Sobic004G065500 Sobic009G183300 Sobic009G183300 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100 Sobic005G028700--Sobic003G063200 Sobic009G129000 Sobic009G129000 Sobic005G028700--Sobic009G129000 Sobic005G028700--Sobic010G086200 Sobic005G028700--Sobic004G065500 Sobic005G028700--Sobic004G247200 Sobic005G028700--Sobic007G151100 Sobic005G028700--Sobic002G356101 Sobic001G477300 Sobic001G477300 Sobic005G028700--Sobic001G477300 Sobic004G306300 Sobic004G306300 Sobic005G028700--Sobic004G306300 Sobic001G399100--Sobic009G033700 Sobic009G046600 Sobic009G046600 Sobic001G399100--Sobic009G046600 Sobic010G107100 Sobic010G107100 Sobic001G399100--Sobic010G107100 Sobic004G186500 Sobic004G186500 Sobic001G399100--Sobic004G186500 Sobic003G019200 Sobic003G019200 Sobic001G399100--Sobic003G019200 Sobic001G399100--Sobic009G200700 Sobic001G399100--Sobic005G028700 Sobic005G229700 Sobic005G229700 Sobic001G399100--Sobic005G229700 Sobic001G399100--Sobic010G086200 Sobic001G538866--Sobic002G140300 Sobic001G040200 Sobic001G040200 Sobic001G538866--Sobic001G040200 Sobic004G280900 Sobic004G280900 Sobic001G538866--Sobic004G280900 Sobic001G538866--Sobic002G036100 Sobic003G324400 Sobic003G324400 Sobic001G538866--Sobic003G324400 Sobic006G165100 Sobic006G165100 Sobic001G538866--Sobic006G165100 Sobic001G077400 Sobic001G077400 Sobic001G538866--Sobic001G077400 Sobic001G538866--Sobic007G151100 Sobic001G538866--Sobic009G200700 Sobic003G063200--Sobic005G028700 Sobic003G063200--Sobic010G204600 Sobic003G063200--Sobic004G247200 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic009G033700--Sobic010G086200 Sobic003G037800 Sobic003G037800 Sobic009G033700--Sobic003G037800 Sobic001G281400 Sobic001G281400 Sobic009G033700--Sobic001G281400 Sobic003G249800 Sobic003G249800 Sobic009G033700--Sobic003G249800 Sobic007G198100 Sobic007G198100 Sobic009G033700--Sobic007G198100 Sobic009G033700--Sobic009G129000 Sobic009G033700--Sobic002G245100 Sobic009G143400 Sobic009G143400 Sobic009G033700--Sobic009G143400 Sobic009G033700--Sobic004G065500 Sobic009G248500 Sobic009G248500 Sobic001G464900--Sobic009G248500 Sobic001G322200 Sobic001G322200 Sobic001G464900--Sobic001G322200 Sobic009G027900 Sobic009G027900 Sobic001G464900--Sobic009G027900 Sobic006G159600 Sobic006G159600 Sobic001G464900--Sobic006G159600 Sobic001G464900--Sobic005G228900 Sobic001G173300 Sobic001G173300 Sobic001G464900--Sobic001G173300 Sobic001G464900--Sobic007G198100 Sobic001G464900--Sobic002G356101 Sobic010G065900 Sobic010G065900 Sobic001G464900--Sobic010G065900
Octagon: transcription factors


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