Gene annotation
Transcriptome id Sobic.001G464900.1
Synonym Sb01g043620, ACA2,
Functional annotation "Ca ATPase, IIB type" (PubMedID : 22196357)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
calcium-transporting ATPase, plasma membrane-type, putative, expressed
UniProt C5WTS5
Pfam PF00690 PF12515 PF12710 PF00689 PF00122
Panther DB PTHR24093 PTHR24093:SF221
NCBI CDD -
KEGG Orthology K01537; P-type Ca2+ transporter type 2C
Gene Ontology GO:0005516; calmodulin binding GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT4G37640 : calcium ATPase 2
RAP-DB (Rice) LOC_Os03g10640.1 : calcium-transporting ATPase, plasma membrane-type, putative, expressed
MaizeGDB (Corn) Zm00025a005017 , Zm00025a001148 , Zm00025a004481 , Zm00025a007407 , Zm00025a033769
Brachypodium KQK23041 , KQJ86075 , KQK11453
Barley HORVU4Hr1G069990.11 , HORVU4Hr1G069990.10 , HORVU4Hr1G069990.12 , HORVU5Hr1G018160.4 , HORVU5Hr1G018160.1 , HORVU5Hr1G018160.3 , HORVU5Hr1G018160.2 , HORVU4Hr1G069990.9 , HORVU4Hr1G069990.8 , HORVU4Hr1G069990.5 , HORVU4Hr1G069990.4 , HORVU4Hr1G069990.7 , HORVU4Hr1G069990.6 , HORVU4Hr1G069990.3 , HORVU4Hr1G069990.2
Wheat TraesCS5D02G080700 , TraesCS5D02G080700 , TraesCS4A02G046800 , TraesCS4A02G046800 , TraesCS4A02G046800 , TraesCS4D02G257900 , TraesCS4B02G258000 , TraesCS4B02G258000 , TraesCS4B02G258000
Populus -


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cDNA sequences
Sobic.001G464900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G248500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@C4-dicarboxylate transporter/malic acid transport protein, expressed -
2 Sobic.001G322200 hydrolase, alpha/beta fold family protein, putative, expressed -
3 Sobic.009G027900 TKL_IRAK_CR4L.4 - The CR4L subfamily has homology with Crinkly4, expressed -
4 Sobic.006G159600 cytochrome b561, putative, expressed K08360: cytochrome b-561
5 Sobic.005G228900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.001G173300 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
7 Sobic.007G198100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@membrane protein, putative, expressed -
8 Sobic.002G356101 - -
9 Sobic.010G065900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@formin-like protein 13, putative, expressed -
10 Sobic.003G037800 transferase family protein, putative, expressed -
11 Sobic.003G125650 - K02183: calmodulin
12 Sobic.001G538866 - -
13 Sobic.006G066200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@prephenate dehydratase domain containing protein, expressed K05359: ADT, arogenate/prephenate dehydratase
14 Sobic.009G033700 protein kinase, putative, expressed K13436: pto-interacting protein 1
15 Sobic.006G158200 lectin-like receptor kinase, putative, expressed -
16 Sobic.002G131800 copine, putative, expressed K16280: E3 ubiquitin-protein ligase RGLG
17 Sobic.004G341800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thioredoxin family protein, putative, expressed -
18 Sobic.010G086200 GRAM domain containing protein, expressed -
19 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
20 Sobic.004G247200 erwinia induced protein 2, putative, expressed -


Gene co-expression network
sample Sobic001G464900 Sobic001G464900 Sobic009G248500 Sobic009G248500 Sobic001G464900--Sobic009G248500 Sobic001G322200 Sobic001G322200 Sobic001G464900--Sobic001G322200 Sobic009G027900 Sobic009G027900 Sobic001G464900--Sobic009G027900 Sobic006G159600 Sobic006G159600 Sobic001G464900--Sobic006G159600 Sobic005G228900 Sobic005G228900 Sobic001G464900--Sobic005G228900 Sobic001G173300 Sobic001G173300 Sobic001G464900--Sobic001G173300 Sobic007G198100 Sobic007G198100 Sobic001G464900--Sobic007G198100 Sobic002G356101 Sobic002G356101 Sobic001G464900--Sobic002G356101 Sobic010G065900 Sobic010G065900 Sobic001G464900--Sobic010G065900 Sobic009G248500--Sobic001G322200 Sobic001G267600 Sobic001G267600 Sobic009G248500--Sobic001G267600 Sobic003G037800 Sobic003G037800 Sobic009G248500--Sobic003G037800 Sobic009G248500--Sobic009G027900 Sobic009G248500--Sobic002G356101 Sobic001G247300 Sobic001G247300 Sobic009G248500--Sobic001G247300 Sobic003G228900 Sobic003G228900 Sobic009G248500--Sobic003G228900 Sobic006G066200 Sobic006G066200 Sobic009G248500--Sobic006G066200 Sobic003G093000 Sobic003G093000 Sobic009G248500--Sobic003G093000 Sobic001G322200--Sobic009G248500 Sobic004G341800 Sobic004G341800 Sobic001G322200--Sobic004G341800 Sobic001G322200--Sobic009G027900 Sobic001G322200--Sobic001G267600 Sobic001G322200--Sobic003G228900 Sobic002G189100 Sobic002G189100 Sobic001G322200--Sobic002G189100 Sobic004G041900 Sobic004G041900 Sobic001G322200--Sobic004G041900 Sobic003G049700 Sobic003G049700 Sobic001G322200--Sobic003G049700 Sobic004G065500 Sobic004G065500 Sobic001G322200--Sobic004G065500 Sobic009G027900--Sobic009G248500 Sobic009G027900--Sobic001G322200 Sobic009G027900--Sobic006G066200 Sobic008G042900 Sobic008G042900 Sobic009G027900--Sobic008G042900 Sobic002G140300 Sobic002G140300 Sobic009G027900--Sobic002G140300 Sobic001G532200 Sobic001G532200 Sobic009G027900--Sobic001G532200 Sobic009G027900--Sobic001G464900 Sobic006G165100 Sobic006G165100 Sobic009G027900--Sobic006G165100 Sobic001G516600 Sobic001G516600 Sobic009G027900--Sobic001G516600 Sobic006G137800 Sobic006G137800 Sobic006G159600--Sobic006G137800 Sobic002G348100 Sobic002G348100 Sobic006G159600--Sobic002G348100 Sobic003G125650 Sobic003G125650 Sobic006G159600--Sobic003G125650 Sobic006G067800 Sobic006G067800 Sobic006G159600--Sobic006G067800 Sobic004G321300 Sobic004G321300 Sobic006G159600--Sobic004G321300 Sobic008G025600 Sobic008G025600 Sobic006G159600--Sobic008G025600 Sobic007G197800 Sobic007G197800 Sobic006G159600--Sobic007G197800 Sobic009G159400 Sobic009G159400 Sobic006G159600--Sobic009G159400 Sobic006G159600--Sobic001G464900 Sobic007G151100 Sobic007G151100 Sobic005G228900--Sobic007G151100 Sobic005G228900--Sobic002G356101 Sobic004G247200 Sobic004G247200 Sobic005G228900--Sobic004G247200 Sobic005G028700 Sobic005G028700 Sobic005G228900--Sobic005G028700 Sobic001G399100 Sobic001G399100 Sobic005G228900--Sobic001G399100 Sobic001G538866 Sobic001G538866 Sobic005G228900--Sobic001G538866 Sobic003G063200 Sobic003G063200 Sobic005G228900--Sobic003G063200 Sobic009G033700 Sobic009G033700 Sobic005G228900--Sobic009G033700 Sobic005G228900--Sobic001G464900 Sobic001G173300--Sobic001G516600 Sobic004G257300 Sobic004G257300 Sobic001G173300--Sobic004G257300 Sobic004G036600 Sobic004G036600 Sobic001G173300--Sobic004G036600 Sobic009G208800 Sobic009G208800 Sobic001G173300--Sobic009G208800 Sobic001G084100 Sobic001G084100 Sobic001G173300--Sobic001G084100 Sobic001G173300--Sobic010G065900 Sobic001G173300--Sobic007G151100 Sobic001G173300--Sobic009G027900 Sobic005G168100 Sobic005G168100 Sobic001G173300--Sobic005G168100 Sobic007G198100--Sobic009G033700 Sobic010G086200 Sobic010G086200 Sobic007G198100--Sobic010G086200 Sobic007G198100--Sobic002G356101 Sobic009G200700 Sobic009G200700 Sobic007G198100--Sobic009G200700 Sobic007G198100--Sobic003G037800 Sobic003G019200 Sobic003G019200 Sobic007G198100--Sobic003G019200 Sobic001G281400 Sobic001G281400 Sobic007G198100--Sobic001G281400 Sobic009G143400 Sobic009G143400 Sobic007G198100--Sobic009G143400 Sobic010G213400 Sobic010G213400 Sobic007G198100--Sobic010G213400 Sobic002G356101--Sobic010G086200 Sobic007G074000 Sobic007G074000 Sobic002G356101--Sobic007G074000 Sobic002G356101--Sobic004G065500 Sobic002G356101--Sobic001G247300 Sobic009G247900 Sobic009G247900 Sobic002G356101--Sobic009G247900 Sobic003G430400 Sobic003G430400 Sobic002G356101--Sobic003G430400 Sobic009G184000 Sobic009G184000 Sobic002G356101--Sobic009G184000 Sobic005G196800 Sobic005G196800 Sobic002G356101--Sobic005G196800 Sobic002G356101--Sobic009G200700 Sobic010G028200 Sobic010G028200 Sobic010G065900--Sobic010G028200 Sobic010G065900--Sobic001G173300 Sobic002G393400 Sobic002G393400 Sobic010G065900--Sobic002G393400 Sobic009G141800 Sobic009G141800 Sobic010G065900--Sobic009G141800 Sobic010G065900--Sobic001G516600 Sobic003G209000 Sobic003G209000 Sobic010G065900--Sobic003G209000 Sobic004G318100 Sobic004G318100 Sobic010G065900--Sobic004G318100 Sobic003G160700 Sobic003G160700 Sobic010G065900--Sobic003G160700 Sobic010G065900--Sobic001G322200
Octagon: transcription factors


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