Gene annotation
Transcriptome id Sobic.005G028700.1
Synonym Sb05g002410
Functional annotation peflin, putative, expressed
UniProt C5Y461
Pfam PF13202 PF13405
Panther DB PTHR10183
NCBI CDD KOG0037; Ca2+-binding protein, EF-Hand protein superfamily
KEGG Orthology K13448; calcium-binding protein CML
Gene Ontology GO:0005509; calcium ion binding


Orthologs (automatic annotation)
TAIR AT3G10300 : Calcium-binding EF-hand family protein
RAP-DB (Rice) LOC_Os11g04480.1 : peflin, putative, expressed
MaizeGDB (Corn) Zm00025a033431
Brachypodium KQJ89572 , KQJ92383
Barley HORVU5Hr1G043650.3 , HORVU5Hr1G043650.2 , HORVU5Hr1G043650.1 , HORVU5Hr1G043650.7 , HORVU5Hr1G043650.6 , HORVU5Hr1G043650.5 , HORVU5Hr1G043650.4 , HORVU4Hr1G026030.3 , HORVU4Hr1G026030.2 , HORVU4Hr1G026030.1 , HORVU4Hr1G026030.7 , HORVU4Hr1G026030.6 , HORVU4Hr1G026030.5 , HORVU4Hr1G026030.9 , HORVU4Hr1G026030.8
Wheat TraesCS5D02G142800 , TraesCS5A02G136100 , TraesCS4A02G186100 , TraesCS4D02G127600 , TraesCS5B02G135100 , TraesCS4B02G132800
Populus -


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cDNA sequences
Sobic.005G028700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
2 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
3 Sobic.010G086200 GRAM domain containing protein, expressed -
4 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
5 Sobic.004G247200 erwinia induced protein 2, putative, expressed -
6 Sobic.007G151100 12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
7 Sobic.002G356101 - -
8 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
9 Sobic.004G306300 expressed protein -
10 Sobic.009G046600 stress-related protein, putative, expressed -
11 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
12 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
13 Sobic.009G247900 similar to Putative late embryogenesis abundant protein(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
14 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
15 Sobic.003G324400 Not investigated(PubMedID : 23766026)@Contribute to rice salt tolerance under a salt inducible abscisic acid 2 (ABA2) promoter(PubMedID : 28393269)@AP2 domain containing protein, expressed -
16 Sobic.009G179500 expressed protein -
17 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
18 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
19 Sobic.004G321300 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
20 Sobic.009G023200 glycine-rich protein A3, putative, expressed -


Gene co-expression network
sample Sobic005G028700 Sobic005G028700 Sobic003G063200 Sobic003G063200 Sobic005G028700--Sobic003G063200 Sobic009G129000 Sobic009G129000 Sobic005G028700--Sobic009G129000 Sobic010G086200 Sobic010G086200 Sobic005G028700--Sobic010G086200 Sobic004G065500 Sobic004G065500 Sobic005G028700--Sobic004G065500 Sobic004G247200 Sobic004G247200 Sobic005G028700--Sobic004G247200 Sobic007G151100 Sobic007G151100 Sobic005G028700--Sobic007G151100 Sobic002G356101 Sobic002G356101 Sobic005G028700--Sobic002G356101 Sobic001G477300 Sobic001G477300 Sobic005G028700--Sobic001G477300 Sobic004G306300 Sobic004G306300 Sobic005G028700--Sobic004G306300 Sobic003G063200--Sobic005G028700 Sobic010G204600 Sobic010G204600 Sobic003G063200--Sobic010G204600 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic001G037000 Sobic001G037000 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic009G129000--Sobic010G086200 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G033700 Sobic009G033700 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic009G129000--Sobic004G065500 Sobic010G217800 Sobic010G217800 Sobic009G129000--Sobic010G217800 Sobic006G267200 Sobic006G267200 Sobic009G129000--Sobic006G267200 Sobic009G129000--Sobic010G204600 Sobic010G086200--Sobic006G267200 Sobic010G086200--Sobic004G065500 Sobic004G321300 Sobic004G321300 Sobic010G086200--Sobic004G321300 Sobic009G141800 Sobic009G141800 Sobic010G086200--Sobic009G141800 Sobic010G086200--Sobic009G129000 Sobic009G143400 Sobic009G143400 Sobic010G086200--Sobic009G143400 Sobic001G459800 Sobic001G459800 Sobic010G086200--Sobic001G459800 Sobic010G086200--Sobic009G033700 Sobic003G393900 Sobic003G393900 Sobic010G086200--Sobic003G393900 Sobic004G065500--Sobic006G267200 Sobic004G065500--Sobic001G459800 Sobic004G065500--Sobic003G393900 Sobic007G074000 Sobic007G074000 Sobic004G065500--Sobic007G074000 Sobic004G065500--Sobic010G086200 Sobic004G065500--Sobic004G306300 Sobic003G228900 Sobic003G228900 Sobic004G065500--Sobic003G228900 Sobic004G065500--Sobic004G321300 Sobic009G247900 Sobic009G247900 Sobic004G065500--Sobic009G247900 Sobic004G247200--Sobic003G063200 Sobic004G247200--Sobic005G028700 Sobic004G259600 Sobic004G259600 Sobic004G247200--Sobic004G259600 Sobic004G247200--Sobic001G055600 Sobic004G247200--Sobic010G204600 Sobic004G247200--Sobic004G065500 Sobic004G247200--Sobic009G183300 Sobic001G067601 Sobic001G067601 Sobic004G247200--Sobic001G067601 Sobic002G348100 Sobic002G348100 Sobic004G247200--Sobic002G348100 Sobic001G516600 Sobic001G516600 Sobic007G151100--Sobic001G516600 Sobic003G158500 Sobic003G158500 Sobic007G151100--Sobic003G158500 Sobic007G151100--Sobic002G356101 Sobic001G538866 Sobic001G538866 Sobic007G151100--Sobic001G538866 Sobic007G151100--Sobic005G028700 Sobic002G140300 Sobic002G140300 Sobic007G151100--Sobic002G140300 Sobic002G245100 Sobic002G245100 Sobic007G151100--Sobic002G245100 Sobic001G513700 Sobic001G513700 Sobic007G151100--Sobic001G513700 Sobic002G036100 Sobic002G036100 Sobic007G151100--Sobic002G036100 Sobic002G356101--Sobic010G086200 Sobic002G356101--Sobic007G074000 Sobic002G356101--Sobic004G065500 Sobic001G247300 Sobic001G247300 Sobic002G356101--Sobic001G247300 Sobic002G356101--Sobic009G247900 Sobic003G430400 Sobic003G430400 Sobic002G356101--Sobic003G430400 Sobic009G184000 Sobic009G184000 Sobic002G356101--Sobic009G184000 Sobic005G196800 Sobic005G196800 Sobic002G356101--Sobic005G196800 Sobic002G356101--Sobic009G200700 Sobic001G124600 Sobic001G124600 Sobic001G477300--Sobic001G124600 Sobic004G187900 Sobic004G187900 Sobic001G477300--Sobic004G187900 Sobic002G046100 Sobic002G046100 Sobic001G477300--Sobic002G046100 Sobic001G308300 Sobic001G308300 Sobic001G477300--Sobic001G308300 Sobic001G477300--Sobic010G086200 Sobic001G477300--Sobic006G267200 Sobic001G477300--Sobic009G129000 Sobic009G159400 Sobic009G159400 Sobic001G477300--Sobic009G159400 Sobic001G477300--Sobic004G065500 Sobic004G306300--Sobic004G065500 Sobic004G306300--Sobic001G459800 Sobic004G306300--Sobic003G393900 Sobic001G138600 Sobic001G138600 Sobic004G306300--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic004G306300--Sobic003G369100 Sobic004G306300--Sobic004G321300 Sobic004G306300--Sobic006G267200 Sobic004G141200 Sobic004G141200 Sobic004G306300--Sobic004G141200 Sobic004G306300--Sobic001G055600
Octagon: transcription factors


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