Gene annotation
Transcriptome id Sobic.001G037000.1
Synonym AL2, Sb01g003420
Functional annotation PHD finger protein, putative, expressed
UniProt C5WV33
Pfam PF00628 PF12165
Panther DB PTHR12321
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT5G05610 : alfin-like 1
RAP-DB (Rice) LOC_Os07g12910.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a016446 , Zm00025a008785
Brachypodium KQK12464
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G037000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
2 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
3 Sobic.001G422900 zinc finger family protein, putative, expressed -
4 Sobic.010G204600 SNF7 domain containing protein, putative, expressed K12197: CHMP1, VPS46, charged multivesicular body protein 1
5 Sobic.001G067601 - K17553: protein phosphatase 1 regulatory subunit 11
6 Sobic.009G016201 - K09481: SEC61B, protein transport protein SEC61 subunit beta
7 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
8 Sobic.002G205300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
9 Sobic.003G181500 ZOS1-09 - C2H2 zinc finger protein, expressed -
10 Sobic.010G086200 GRAM domain containing protein, expressed -
11 Sobic.004G306300 expressed protein -
12 Sobic.008G161000 protein kinase domain containing protein, expressed -
13 Sobic.002G282400 expressed protein -
14 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -
15 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
16 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
17 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
18 Sobic.009G023200 glycine-rich protein A3, putative, expressed -
19 Sobic.001G055600 prenylated rab acceptor, putative, expressed -
20 Sobic.002G407900 copper/zinc superoxide dismutase, putative, expressed K04565: superoxide dismutase, Cu-Zn family


Gene co-expression network
sample Sobic001G037000 Sobic001G037000 Sobic003G249800 Sobic003G249800 Sobic001G037000--Sobic003G249800 Sobic003G063200 Sobic003G063200 Sobic001G037000--Sobic003G063200 Sobic001G422900 Sobic001G422900 Sobic001G037000--Sobic001G422900 Sobic010G204600 Sobic010G204600 Sobic001G037000--Sobic010G204600 Sobic001G067601 Sobic001G067601 Sobic001G037000--Sobic001G067601 Sobic009G016201 Sobic009G016201 Sobic001G037000--Sobic009G016201 Sobic003G265200 Sobic003G265200 Sobic001G037000--Sobic003G265200 Sobic002G205300 Sobic002G205300 Sobic001G037000--Sobic002G205300 Sobic003G181500 Sobic003G181500 Sobic001G037000--Sobic003G181500 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic003G249800--Sobic001G037000 Sobic009G033700 Sobic009G033700 Sobic003G249800--Sobic009G033700 Sobic002G046100 Sobic002G046100 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G249800--Sobic003G181500 Sobic005G028700 Sobic005G028700 Sobic003G063200--Sobic005G028700 Sobic003G063200--Sobic010G204600 Sobic004G247200 Sobic004G247200 Sobic003G063200--Sobic004G247200 Sobic001G055600 Sobic001G055600 Sobic003G063200--Sobic001G055600 Sobic003G063200--Sobic001G037000 Sobic009G023200 Sobic009G023200 Sobic003G063200--Sobic009G023200 Sobic001G390300 Sobic001G390300 Sobic003G063200--Sobic001G390300 Sobic004G306300 Sobic004G306300 Sobic003G063200--Sobic004G306300 Sobic002G407900 Sobic002G407900 Sobic003G063200--Sobic002G407900 Sobic002G245800 Sobic002G245800 Sobic001G422900--Sobic002G245800 Sobic001G422900--Sobic010G204600 Sobic001G422900--Sobic001G037000 Sobic001G095300 Sobic001G095300 Sobic001G422900--Sobic001G095300 Sobic001G422900--Sobic003G181500 Sobic001G422900--Sobic003G249800 Sobic005G229700 Sobic005G229700 Sobic001G422900--Sobic005G229700 Sobic001G422900--Sobic002G211900 Sobic002G405600 Sobic002G405600 Sobic001G422900--Sobic002G405600 Sobic010G204600--Sobic001G095300 Sobic010G204600--Sobic003G063200 Sobic010G204600--Sobic002G405600 Sobic004G157000 Sobic004G157000 Sobic010G204600--Sobic004G157000 Sobic010G204600--Sobic009G023200 Sobic009G129000 Sobic009G129000 Sobic010G204600--Sobic009G129000 Sobic010G204600--Sobic001G055600 Sobic003G202200 Sobic003G202200 Sobic010G204600--Sobic003G202200 Sobic010G204600--Sobic009G033700 Sobic001G019900 Sobic001G019900 Sobic001G067601--Sobic001G019900 Sobic001G067601--Sobic009G023200 Sobic001G067601--Sobic002G046100 Sobic010G217900 Sobic010G217900 Sobic001G067601--Sobic010G217900 Sobic001G067601--Sobic003G063200 Sobic001G067601--Sobic001G037000 Sobic005G228000 Sobic005G228000 Sobic001G067601--Sobic005G228000 Sobic001G067601--Sobic003G181500 Sobic003G162700 Sobic003G162700 Sobic001G067601--Sobic003G162700 Sobic002G263800 Sobic002G263800 Sobic009G016201--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic009G016201--Sobic007G095400 Sobic008G132800 Sobic008G132800 Sobic009G016201--Sobic008G132800 Sobic004G172700 Sobic004G172700 Sobic009G016201--Sobic004G172700 Sobic009G016201--Sobic003G249800 Sobic009G016201--Sobic001G037000 Sobic009G016201--Sobic008G161000 Sobic010G237000 Sobic010G237000 Sobic009G016201--Sobic010G237000 Sobic010G029400 Sobic010G029400 Sobic009G016201--Sobic010G029400 Sobic006G157500 Sobic006G157500 Sobic003G265200--Sobic006G157500 Sobic003G260300 Sobic003G260300 Sobic003G265200--Sobic003G260300 Sobic002G328400 Sobic002G328400 Sobic003G265200--Sobic002G328400 Sobic001G431500 Sobic001G431500 Sobic003G265200--Sobic001G431500 Sobic002G336600 Sobic002G336600 Sobic003G265200--Sobic002G336600 Sobic001G259900 Sobic001G259900 Sobic003G265200--Sobic001G259900 Sobic009G184000 Sobic009G184000 Sobic003G265200--Sobic009G184000 Sobic003G228900 Sobic003G228900 Sobic003G265200--Sobic003G228900 Sobic003G043600 Sobic003G043600 Sobic003G265200--Sobic003G043600 Sobic002G205300--Sobic001G037000 Sobic005G103900 Sobic005G103900 Sobic002G205300--Sobic005G103900 Sobic002G205300--Sobic002G282400 Sobic002G205300--Sobic001G422900 Sobic002G205300--Sobic005G229700 Sobic007G107000 Sobic007G107000 Sobic002G205300--Sobic007G107000 Sobic002G205300--Sobic009G016201 Sobic002G205300--Sobic003G249800 Sobic009G070400 Sobic009G070400 Sobic002G205300--Sobic009G070400 Sobic004G187900 Sobic004G187900 Sobic003G181500--Sobic004G187900 Sobic003G350300 Sobic003G350300 Sobic003G181500--Sobic003G350300 Sobic010G149300 Sobic010G149300 Sobic003G181500--Sobic010G149300 Sobic003G181500--Sobic003G249800 Sobic001G288800 Sobic001G288800 Sobic003G181500--Sobic001G288800 Sobic001G281400 Sobic001G281400 Sobic003G181500--Sobic001G281400 Sobic003G181500--Sobic009G023200 Sobic003G181500--Sobic002G211900 Sobic003G181500--Sobic002G046100
Octagon: transcription factors


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