Gene annotation
| Transcriptome id | Sobic.006G157500.1 |
|---|---|
| Synonym | RMA1, Sb06g023430, ATRMA1 |
| Functional annotation | zinc finger, C3HC4 type domain containing protein, expressed |
| UniProt | C5YCL1 |
| Pfam | PF00097 |
| Panther DB | PTHR12313 PTHR12313:SF9 |
| NCBI CDD | KOG0823; Predicted E3 ubiquitin ligase |
| KEGG Orthology | K10666; E3 ubiquitin-protein ligase RNF5 |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT4G03510 : RING membrane-anchor 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os04g44820.2 : zinc finger, C3HC4 type domain containing protein, expressed |
| MaizeGDB (Corn) | Zm00025a056571 , Zm00025a010458 |
| Brachypodium | - |
| Barley | HORVU2Hr1G091220.2 , HORVU2Hr1G091220.3 , HORVU2Hr1G091220.1 |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.006G157500 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G168900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed | - |
| 2 | Sobic.003G265200 | B3 DNA binding domain containing protein, expressed | K09287: RAV-like factor |
| 3 | Sobic.002G339100 | similar to Putative organic cation transporter(PubMedID : 24655390)@similar to Putative organic cation transporter(PubMedID : 24655390)@organic cation transporter-related, putative, expressed | - |
| 4 | Sobic.003G260300 | MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 5 | Sobic.001G477600 | zinc finger protein, putative, expressed | - |
| 6 | Sobic.001G318700 | glutathione S-transferase GSTU6, putative, expressed | K00799: GST, glutathione S-transferase |
| 7 | Sobic.009G184000 | ICE-like protease p20 domain containing protein, putative, expressed | - |
| 8 | Sobic.004G109900 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 9 | Sobic.001G112200 | LTPL118 - Protease inhibitor/seed storage/LTP family protein precursor, expressed | - |
| 10 | Sobic.001G138600 | VQ domain containing protein, putative, expressed | - |
| 11 | Sobic.003G303100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dynein light chain type 1 domain containing protein, expressed | K10418: dynein light chain LC8-type |
| 12 | Sobic.001G502400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein ATL3F, putative, expressed | - |
| 13 | Sobic.004G212900 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed | - |
| 14 | Sobic.001G372100 | beta-amylase 3(PubMedID : 26465154)@beta-amylase 3(PubMedID : 26465154)@beta-amylase, putative, expressed | - |
| 15 | Sobic.007G177100 | "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 16 | Sobic.001G431500 | gibberellin receptor GID1L2, putative, expressed | - |
| 17 | Sobic.010G161700 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 18 | Sobic.005G107900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed | - |
| 19 | Sobic.007G169700 | inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed | K01240: uridine nucleosidase |
| 20 | Sobic.003G043600 | BAHD acyl transferase(PubMedID : 28944535)@transferase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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