Gene annotation
Transcriptome id Sobic.004G212900.1
Synonym Sb04g025830
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed
UniProt C5XXC3
Pfam PF02214
Panther DB PTHR14499 PTHR14499:SF75
NCBI CDD KOG2714; SETA binding protein SB1 and related proteins, contain BTB/POZ domain
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24240 : BTB/POZ domain with WD40/YVTN repeat-like protein
RAP-DB (Rice) LOC_Os04g42310.1 : B4-BTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed
MaizeGDB (Corn) Zm00025a021191 , Zm00025a056413
Brachypodium KQK10921 , PNT61396 , PNT61395 , KQK00308
Barley HORVU2Hr1G086690.2 , HORVU2Hr1G086690.1 , HORVU6Hr1G056460.1 , HORVU6Hr1G056460.3 , HORVU6Hr1G056460.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157500 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
2 Sobic.007G177100 "Syntelog of ZmMYB42, bind to the COMT1, CSE, 4CL2, F5H, and SbMYB42 promroter region"(PubMedID : 30387379)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.003G382800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
4 Sobic.010G274900 serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed -
5 Sobic.002G335300 uncharacterized Cys-rich domain containing protein, putative, expressed -
6 Sobic.009G074100 prenylated rab acceptor, putative, expressed -
7 Sobic.001G477600 zinc finger protein, putative, expressed -
8 Sobic.002G291900 RING-H2 finger protein, putative, expressed -
9 Sobic.003G357300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
10 Sobic.007G126100 trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
11 Sobic.001G483400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
12 Sobic.007G015600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@- -
13 Sobic.001G169500 - -
14 Sobic.001G138600 VQ domain containing protein, putative, expressed -
15 Sobic.004G075000 expressed protein -
16 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
17 Sobic.001G254100 "PGL1(Ortholog in rice:Heang and Sassa, 2012)"(PubMedID : 31659838)@bHLH family protein, putative, expressed -
18 Sobic.001G009500 - -
19 Sobic.005G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
20 Sobic.009G143400 chitin-inducible gibberellin-responsive protein, putative, expressed -


Gene co-expression network
sample Sobic004G212900 Sobic004G212900 Sobic006G157500 Sobic006G157500 Sobic004G212900--Sobic006G157500 Sobic007G177100 Sobic007G177100 Sobic004G212900--Sobic007G177100 Sobic003G382800 Sobic003G382800 Sobic004G212900--Sobic003G382800 Sobic010G274900 Sobic010G274900 Sobic004G212900--Sobic010G274900 Sobic002G335300 Sobic002G335300 Sobic004G212900--Sobic002G335300 Sobic009G074100 Sobic009G074100 Sobic004G212900--Sobic009G074100 Sobic001G477600 Sobic001G477600 Sobic004G212900--Sobic001G477600 Sobic002G291900 Sobic002G291900 Sobic004G212900--Sobic002G291900 Sobic003G357300 Sobic003G357300 Sobic004G212900--Sobic003G357300 Sobic009G168900 Sobic009G168900 Sobic006G157500--Sobic009G168900 Sobic003G265200 Sobic003G265200 Sobic006G157500--Sobic003G265200 Sobic002G339100 Sobic002G339100 Sobic006G157500--Sobic002G339100 Sobic003G260300 Sobic003G260300 Sobic006G157500--Sobic003G260300 Sobic006G157500--Sobic001G477600 Sobic001G318700 Sobic001G318700 Sobic006G157500--Sobic001G318700 Sobic009G184000 Sobic009G184000 Sobic006G157500--Sobic009G184000 Sobic004G109900 Sobic004G109900 Sobic006G157500--Sobic004G109900 Sobic001G112200 Sobic001G112200 Sobic006G157500--Sobic001G112200 Sobic009G159200 Sobic009G159200 Sobic007G177100--Sobic009G159200 Sobic007G126100 Sobic007G126100 Sobic007G177100--Sobic007G126100 Sobic007G177100--Sobic004G212900 Sobic007G177100--Sobic006G157500 Sobic004G166400 Sobic004G166400 Sobic007G177100--Sobic004G166400 Sobic010G030401 Sobic010G030401 Sobic007G177100--Sobic010G030401 Sobic002G254200 Sobic002G254200 Sobic007G177100--Sobic002G254200 Sobic007G197600 Sobic007G197600 Sobic007G177100--Sobic007G197600 Sobic003G360000 Sobic003G360000 Sobic007G177100--Sobic003G360000 Sobic001G138600 Sobic001G138600 Sobic003G382800--Sobic001G138600 Sobic004G141200 Sobic004G141200 Sobic003G382800--Sobic004G141200 Sobic001G169500 Sobic001G169500 Sobic003G382800--Sobic001G169500 Sobic001G108200 Sobic001G108200 Sobic003G382800--Sobic001G108200 Sobic003G394400 Sobic003G394400 Sobic003G382800--Sobic003G394400 Sobic004G166200 Sobic004G166200 Sobic003G382800--Sobic004G166200 Sobic002G068600 Sobic002G068600 Sobic003G382800--Sobic002G068600 Sobic003G086600 Sobic003G086600 Sobic003G382800--Sobic003G086600 Sobic003G148600 Sobic003G148600 Sobic003G382800--Sobic003G148600 Sobic010G274900--Sobic001G477600 Sobic003G367200 Sobic003G367200 Sobic010G274900--Sobic003G367200 Sobic003G350300 Sobic003G350300 Sobic010G274900--Sobic003G350300 Sobic008G136400 Sobic008G136400 Sobic010G274900--Sobic008G136400 Sobic010G166500 Sobic010G166500 Sobic010G274900--Sobic010G166500 Sobic006G275200 Sobic006G275200 Sobic010G274900--Sobic006G275200 Sobic009G008900 Sobic009G008900 Sobic010G274900--Sobic009G008900 Sobic007G015600 Sobic007G015600 Sobic010G274900--Sobic007G015600 Sobic010G274900--Sobic003G357300 Sobic002G335300--Sobic004G212900 Sobic003G344600 Sobic003G344600 Sobic002G335300--Sobic003G344600 Sobic002G335300--Sobic003G357300 Sobic001G009500 Sobic001G009500 Sobic002G335300--Sobic001G009500 Sobic002G335300--Sobic009G074100 Sobic008G103700 Sobic008G103700 Sobic002G335300--Sobic008G103700 Sobic006G046900 Sobic006G046900 Sobic002G335300--Sobic006G046900 Sobic009G243400 Sobic009G243400 Sobic002G335300--Sobic009G243400 Sobic003G211200 Sobic003G211200 Sobic002G335300--Sobic003G211200 Sobic005G011300 Sobic005G011300 Sobic009G074100--Sobic005G011300 Sobic004G100700 Sobic004G100700 Sobic009G074100--Sobic004G100700 Sobic004G306300 Sobic004G306300 Sobic009G074100--Sobic004G306300 Sobic001G389000 Sobic001G389000 Sobic009G074100--Sobic001G389000 Sobic003G393900 Sobic003G393900 Sobic009G074100--Sobic003G393900 Sobic009G074100--Sobic001G169500 Sobic001G459800 Sobic001G459800 Sobic009G074100--Sobic001G459800 Sobic003G228900 Sobic003G228900 Sobic009G074100--Sobic003G228900 Sobic004G340900 Sobic004G340900 Sobic009G074100--Sobic004G340900 Sobic001G477600--Sobic001G138600 Sobic001G477600--Sobic001G112200 Sobic003G369100 Sobic003G369100 Sobic001G477600--Sobic003G369100 Sobic002G336600 Sobic002G336600 Sobic001G477600--Sobic002G336600 Sobic001G477600--Sobic003G382800 Sobic007G074000 Sobic007G074000 Sobic001G477600--Sobic007G074000 Sobic003G345100 Sobic003G345100 Sobic001G477600--Sobic003G345100 Sobic005G099000 Sobic005G099000 Sobic001G477600--Sobic005G099000 Sobic001G477600--Sobic004G141200 Sobic001G443800 Sobic001G443800 Sobic002G291900--Sobic001G443800 Sobic003G197200 Sobic003G197200 Sobic002G291900--Sobic003G197200 Sobic010G198500 Sobic010G198500 Sobic002G291900--Sobic010G198500 Sobic002G291900--Sobic003G260300 Sobic007G214600 Sobic007G214600 Sobic002G291900--Sobic007G214600 Sobic002G291900--Sobic003G148600 Sobic001G105900 Sobic001G105900 Sobic002G291900--Sobic001G105900 Sobic007G213800 Sobic007G213800 Sobic002G291900--Sobic007G213800 Sobic003G355100 Sobic003G355100 Sobic002G291900--Sobic003G355100 Sobic004G301000 Sobic004G301000 Sobic003G357300--Sobic004G301000 Sobic003G357300--Sobic004G100700 Sobic003G357300--Sobic003G393900 Sobic003G357300--Sobic001G108200 Sobic003G357300--Sobic004G306300 Sobic003G357300--Sobic006G275200 Sobic009G070400 Sobic009G070400 Sobic003G357300--Sobic009G070400 Sobic002G393000 Sobic002G393000 Sobic003G357300--Sobic002G393000 Sobic001G308300 Sobic001G308300 Sobic003G357300--Sobic001G308300
Octagon: transcription factors


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