Gene annotation
Transcriptome id Sobic.005G039100.1
Synonym Sb05g003280
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Y4Q3
Pfam -
Panther DB PTHR34120 PTHR34120:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G52710 : -
RAP-DB (Rice) LOC_Os11g05530.1 : expressed protein
MaizeGDB (Corn) Zm00025a013008 , Zm00025a039582 , Zm00025a029048
Brachypodium KQJ89421
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
2 Sobic.009G036000 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
3 Sobic.009G169000 thiamine pyrophosphate enzyme, C-terminal TPP binding domain containing protein, expressed K01568: PDC, pyruvate decarboxylase
4 Sobic.004G280200 tobamovirus multiplication protein, putative, expressed -
5 Sobic.003G387000 expressed protein -
6 Sobic.009G036100 similar to Hydrophobic protein LTI6B(PubMedID : 29862293)@OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
7 Sobic.006G230500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
8 Sobic.003G334600 NAC domain transcription factor, putative, expressed -
9 Sobic.003G148600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
10 Sobic.006G231200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
11 Sobic.007G026600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@kelch repeat protein, putative, expressed -
12 Sobic.003G369100 AP2 domain containing protein, expressed -
13 Sobic.003G144700 universal stress protein domain containing protein, putative, expressed -
14 Sobic.003G197200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Decreased expression in phyB-1 mutant(PubMedID : 26893475)@1-aminocyclopropane-1-carboxylate oxidase protein, putative, expressed K05933: aminocyclopropanecarboxylate oxidase
15 Sobic.007G214600 EF hand family protein, putative, expressed -
16 Sobic.002G333300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase receptor precursor, putative, expressed -
17 Sobic.001G108200 expressed protein -
18 Sobic.001G107800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G333400 KI domain interacting kinase 1, putative, expressed -
20 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic005G039100 Sobic005G039100 Sobic001G320900 Sobic001G320900 Sobic005G039100--Sobic001G320900 Sobic009G036000 Sobic009G036000 Sobic005G039100--Sobic009G036000 Sobic009G169000 Sobic009G169000 Sobic005G039100--Sobic009G169000 Sobic004G280200 Sobic004G280200 Sobic005G039100--Sobic004G280200 Sobic003G387000 Sobic003G387000 Sobic005G039100--Sobic003G387000 Sobic009G036100 Sobic009G036100 Sobic005G039100--Sobic009G036100 Sobic006G230500 Sobic006G230500 Sobic005G039100--Sobic006G230500 Sobic003G334600 Sobic003G334600 Sobic005G039100--Sobic003G334600 Sobic003G148600 Sobic003G148600 Sobic005G039100--Sobic003G148600 Sobic001G320900--Sobic009G036000 Sobic003G144700 Sobic003G144700 Sobic001G320900--Sobic003G144700 Sobic001G320900--Sobic009G169000 Sobic001G391500 Sobic001G391500 Sobic001G320900--Sobic001G391500 Sobic001G320900--Sobic003G148600 Sobic001G320900--Sobic009G036100 Sobic003G197200 Sobic003G197200 Sobic001G320900--Sobic003G197200 Sobic003G355100 Sobic003G355100 Sobic001G320900--Sobic003G355100 Sobic001G405500 Sobic001G405500 Sobic001G320900--Sobic001G405500 Sobic009G036000--Sobic001G320900 Sobic009G036000--Sobic009G036100 Sobic009G247900 Sobic009G247900 Sobic009G036000--Sobic009G247900 Sobic001G383700 Sobic001G383700 Sobic009G036000--Sobic001G383700 Sobic003G364600 Sobic003G364600 Sobic009G036000--Sobic003G364600 Sobic007G074000 Sobic007G074000 Sobic009G036000--Sobic007G074000 Sobic001G308300 Sobic001G308300 Sobic009G036000--Sobic001G308300 Sobic009G036000--Sobic001G391500 Sobic004G169200 Sobic004G169200 Sobic009G036000--Sobic004G169200 Sobic009G169000--Sobic001G320900 Sobic009G169000--Sobic003G144700 Sobic009G169000--Sobic004G280200 Sobic009G169000--Sobic003G197200 Sobic009G169000--Sobic003G355100 Sobic007G214600 Sobic007G214600 Sobic009G169000--Sobic007G214600 Sobic009G169000--Sobic003G148600 Sobic001G107800 Sobic001G107800 Sobic009G169000--Sobic001G107800 Sobic007G026600 Sobic007G026600 Sobic009G169000--Sobic007G026600 Sobic004G280200--Sobic009G169000 Sobic004G280200--Sobic001G405500 Sobic003G369100 Sobic003G369100 Sobic004G280200--Sobic003G369100 Sobic004G280200--Sobic007G026600 Sobic003G086600 Sobic003G086600 Sobic004G280200--Sobic003G086600 Sobic003G367200 Sobic003G367200 Sobic004G280200--Sobic003G367200 Sobic004G280200--Sobic003G144700 Sobic006G275200 Sobic006G275200 Sobic004G280200--Sobic006G275200 Sobic002G261200 Sobic002G261200 Sobic004G280200--Sobic002G261200 Sobic003G387000--Sobic003G334600 Sobic003G387000--Sobic004G280200 Sobic003G387000--Sobic001G405500 Sobic009G183300 Sobic009G183300 Sobic003G387000--Sobic009G183300 Sobic003G387000--Sobic001G320900 Sobic009G141800 Sobic009G141800 Sobic003G387000--Sobic009G141800 Sobic005G103300 Sobic005G103300 Sobic003G387000--Sobic005G103300 Sobic003G393900 Sobic003G393900 Sobic003G387000--Sobic003G393900 Sobic003G387000--Sobic003G369100 Sobic009G036100--Sobic009G036000 Sobic009G036100--Sobic007G074000 Sobic009G036100--Sobic001G320900 Sobic001G407800 Sobic001G407800 Sobic009G036100--Sobic001G407800 Sobic009G036100--Sobic009G247900 Sobic002G140300 Sobic002G140300 Sobic009G036100--Sobic002G140300 Sobic009G036100--Sobic003G369100 Sobic003G324400 Sobic003G324400 Sobic009G036100--Sobic003G324400 Sobic001G258300 Sobic001G258300 Sobic009G036100--Sobic001G258300 Sobic010G086200 Sobic010G086200 Sobic006G230500--Sobic010G086200 Sobic009G200700 Sobic009G200700 Sobic006G230500--Sobic009G200700 Sobic003G382800 Sobic003G382800 Sobic006G230500--Sobic003G382800 Sobic001G387900 Sobic001G387900 Sobic006G230500--Sobic001G387900 Sobic004G177700 Sobic004G177700 Sobic006G230500--Sobic004G177700 Sobic006G230500--Sobic001G320900 Sobic006G230500--Sobic003G148600 Sobic002G423300 Sobic002G423300 Sobic006G230500--Sobic002G423300 Sobic010G217800 Sobic010G217800 Sobic006G230500--Sobic010G217800 Sobic003G334600--Sobic003G369100 Sobic001G038900 Sobic001G038900 Sobic003G334600--Sobic001G038900 Sobic008G136400 Sobic008G136400 Sobic003G334600--Sobic008G136400 Sobic002G140400 Sobic002G140400 Sobic003G334600--Sobic002G140400 Sobic008G050600 Sobic008G050600 Sobic003G334600--Sobic008G050600 Sobic003G334600--Sobic001G308300 Sobic003G334600--Sobic007G074000 Sobic003G334600--Sobic003G387000 Sobic003G345100 Sobic003G345100 Sobic003G334600--Sobic003G345100 Sobic003G148600--Sobic003G197200 Sobic003G123600 Sobic003G123600 Sobic003G148600--Sobic003G123600 Sobic003G148600--Sobic003G144700 Sobic003G148600--Sobic003G355100 Sobic003G148600--Sobic007G214600 Sobic004G166200 Sobic004G166200 Sobic003G148600--Sobic004G166200 Sobic003G148600--Sobic001G107800 Sobic003G148600--Sobic001G405500 Sobic003G394400 Sobic003G394400 Sobic003G148600--Sobic003G394400
Octagon: transcription factors


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