Gene annotation
Transcriptome id Sobic.009G074100.2,Sobic.009G074100.3,Sobic.009G074100.5,Sobic.009G074100.4
Synonym Sb09g006240, PRA1.E
Functional annotation prenylated rab acceptor, putative, expressed
UniProt C5YUK5
Pfam PF03208
Panther DB PTHR19317 PTHR19317:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55190 : PRA1 (Prenylated rab acceptor) family protein
RAP-DB (Rice) LOC_Os05g11120.1 : prenylated rab acceptor, putative, expressed
MaizeGDB (Corn) Zm00025a023005 , Zm00025a043154
Brachypodium KQK03162 , KQK07100
Barley HORVU3Hr1G018940.1 , HORVU3Hr1G018940.3 , HORVU3Hr1G018940.2
Wheat TraesCS3A02G104300
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G011300 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
3 Sobic.004G306300 expressed protein -
4 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
5 Sobic.003G393900 Fructose-bisphosphate aldolase(PubMedID : 26186930)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
6 Sobic.001G169500 - -
7 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
8 Sobic.003G228900 cytochrome P450 72A1, putative, expressed -
9 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
10 Sobic.004G301000 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
11 Sobic.010G086200 GRAM domain containing protein, expressed -
12 Sobic.009G159400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@universal stress protein domain containing protein, putative, expressed -
13 Sobic.003G426400 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
15 Sobic.003G084400 ZOS1-03 - C2H2 zinc finger protein, expressed -
16 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
18 Sobic.005G107900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Zm)(PubMedID : 27208977)@O-methyltransferase, putative, expressed -
19 Sobic.003G429000 NADPH quinone oxidoreductase, putative, expressed -
20 Sobic.004G259366 - -


Gene co-expression network
sample Sobic009G074100 Sobic009G074100 Sobic005G011300 Sobic005G011300 Sobic009G074100--Sobic005G011300 Sobic004G100700 Sobic004G100700 Sobic009G074100--Sobic004G100700 Sobic004G306300 Sobic004G306300 Sobic009G074100--Sobic004G306300 Sobic001G389000 Sobic001G389000 Sobic009G074100--Sobic001G389000 Sobic003G393900 Sobic003G393900 Sobic009G074100--Sobic003G393900 Sobic001G169500 Sobic001G169500 Sobic009G074100--Sobic001G169500 Sobic001G459800 Sobic001G459800 Sobic009G074100--Sobic001G459800 Sobic003G228900 Sobic003G228900 Sobic009G074100--Sobic003G228900 Sobic004G340900 Sobic004G340900 Sobic009G074100--Sobic004G340900 Sobic005G011300--Sobic004G100700 Sobic005G011300--Sobic001G169500 Sobic002G188900 Sobic002G188900 Sobic005G011300--Sobic002G188900 Sobic005G107900 Sobic005G107900 Sobic005G011300--Sobic005G107900 Sobic003G432700 Sobic003G432700 Sobic005G011300--Sobic003G432700 Sobic004G141200 Sobic004G141200 Sobic005G011300--Sobic004G141200 Sobic001G140900 Sobic001G140900 Sobic005G011300--Sobic001G140900 Sobic003G084400 Sobic003G084400 Sobic005G011300--Sobic003G084400 Sobic004G171400 Sobic004G171400 Sobic005G011300--Sobic004G171400 Sobic004G100700--Sobic005G011300 Sobic004G100700--Sobic002G188900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic004G100700--Sobic001G169500 Sobic004G100700--Sobic004G141200 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic004G065500 Sobic004G065500 Sobic004G306300--Sobic004G065500 Sobic004G306300--Sobic001G459800 Sobic004G306300--Sobic003G393900 Sobic001G138600 Sobic001G138600 Sobic004G306300--Sobic001G138600 Sobic003G369100 Sobic003G369100 Sobic004G306300--Sobic003G369100 Sobic004G321300 Sobic004G321300 Sobic004G306300--Sobic004G321300 Sobic006G267200 Sobic006G267200 Sobic004G306300--Sobic006G267200 Sobic004G306300--Sobic004G141200 Sobic001G055600 Sobic001G055600 Sobic004G306300--Sobic001G055600 Sobic009G159400 Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G139100 Sobic001G139100 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic003G429000 Sobic003G429000 Sobic001G389000--Sobic003G429000 Sobic003G393900--Sobic004G141200 Sobic003G393900--Sobic001G108200 Sobic003G393900--Sobic001G459800 Sobic003G393900--Sobic004G100700 Sobic003G393900--Sobic002G188900 Sobic003G393900--Sobic004G065500 Sobic003G393900--Sobic006G267200 Sobic003G393900--Sobic005G011300 Sobic003G393900--Sobic003G369100 Sobic001G169500--Sobic005G011300 Sobic001G169500--Sobic004G100700 Sobic005G099000 Sobic005G099000 Sobic001G169500--Sobic005G099000 Sobic003G382800 Sobic003G382800 Sobic001G169500--Sobic003G382800 Sobic004G336500 Sobic004G336500 Sobic001G169500--Sobic004G336500 Sobic001G169500--Sobic003G432700 Sobic006G249300 Sobic006G249300 Sobic001G169500--Sobic006G249300 Sobic001G169500--Sobic005G107900 Sobic002G068600 Sobic002G068600 Sobic001G169500--Sobic002G068600 Sobic001G391500 Sobic001G391500 Sobic001G459800--Sobic001G391500 Sobic001G459800--Sobic006G267200 Sobic001G459800--Sobic004G141200 Sobic001G459800--Sobic003G393900 Sobic001G459800--Sobic003G228900 Sobic001G459800--Sobic004G065500 Sobic001G459800--Sobic001G138600 Sobic007G074000 Sobic007G074000 Sobic001G459800--Sobic007G074000 Sobic001G459800--Sobic005G011300 Sobic006G075400 Sobic006G075400 Sobic003G228900--Sobic006G075400 Sobic010G209200 Sobic010G209200 Sobic003G228900--Sobic010G209200 Sobic009G184000 Sobic009G184000 Sobic003G228900--Sobic009G184000 Sobic004G191400 Sobic004G191400 Sobic003G228900--Sobic004G191400 Sobic003G228900--Sobic003G432700 Sobic003G260300 Sobic003G260300 Sobic003G228900--Sobic003G260300 Sobic007G017500 Sobic007G017500 Sobic003G228900--Sobic007G017500 Sobic009G122400 Sobic009G122400 Sobic003G228900--Sobic009G122400 Sobic001G079300 Sobic001G079300 Sobic003G228900--Sobic001G079300 Sobic004G340900--Sobic009G159400 Sobic002G017800 Sobic002G017800 Sobic004G340900--Sobic002G017800 Sobic009G077800 Sobic009G077800 Sobic004G340900--Sobic009G077800 Sobic004G340900--Sobic010G259600 Sobic004G340900--Sobic001G389000 Sobic005G018700 Sobic005G018700 Sobic004G340900--Sobic005G018700 Sobic004G340900--Sobic004G321300 Sobic004G340900--Sobic003G084400 Sobic005G196800 Sobic005G196800 Sobic004G340900--Sobic005G196800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.