Gene annotation
Transcriptome id Sobic.001G483400.1
Synonym Sb01g045240
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
lipoxygenase protein, putative, expressed
UniProt C5WVT3
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF57
NCBI CDD -
KEGG Orthology K00454; lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT1G17420 : lipoxygenase 3
RAP-DB (Rice) LOC_Os03g08220.1 : lipoxygenase protein, putative, expressed
MaizeGDB (Corn) Zm00025a056147 , Zm00025a000916 , Zm00025a011206
Brachypodium KQJ82852 , KQK23327 , KQK23326
Barley HORVU5Hr1G055110.2 , HORVU5Hr1G055110.1 , HORVU4Hr1G076570.3 , HORVU4Hr1G076570.2 , HORVU4Hr1G076570.1 , HORVU4Hr1G076570.7 , HORVU4Hr1G076570.5 , HORVU4Hr1G076570.4 , HORVU4Hr1G076570.6
Wheat TraesCS2D02G313400 , TraesCS2B02G333600 , TraesCS4D02G294100 , TraesCS4A02G009400 , TraesCS4B02G295200
Populus -


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cDNA sequences
Sobic.001G483400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G010200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
3 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
4 Sobic.002G174200 WRKY74, expressed -
5 Sobic.004G065500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
6 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
7 Sobic.006G190500 expressed protein -
8 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.002G082600 DUF567 domain containing protein, putative, expressed -
10 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
11 Sobic.010G086200 GRAM domain containing protein, expressed -
12 Sobic.002G272900 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
13 Sobic.001G459800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucose 6-dehydrogenase, putative, expressed K00012: UGDH, UDPglucose 6-dehydrogenase
14 Sobic.009G074100 prenylated rab acceptor, putative, expressed -
15 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
16 Sobic.002G374100 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@zinc-finger protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
17 Sobic.002G333300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase receptor precursor, putative, expressed -
18 Sobic.001G320900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
19 Sobic.009G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@VQ domain containing protein, putative, expressed -
20 Sobic.006G267200 pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase


Gene co-expression network
sample Sobic001G483400 Sobic001G483400 Sobic005G010200 Sobic005G010200 Sobic001G483400--Sobic005G010200 Sobic010G220200 Sobic010G220200 Sobic001G483400--Sobic010G220200 Sobic009G129000 Sobic009G129000 Sobic001G483400--Sobic009G129000 Sobic002G174200 Sobic002G174200 Sobic001G483400--Sobic002G174200 Sobic004G065500 Sobic004G065500 Sobic001G483400--Sobic004G065500 Sobic006G230900 Sobic006G230900 Sobic001G483400--Sobic006G230900 Sobic006G190500 Sobic006G190500 Sobic001G483400--Sobic006G190500 Sobic010G217800 Sobic010G217800 Sobic001G483400--Sobic010G217800 Sobic002G082600 Sobic002G082600 Sobic001G483400--Sobic002G082600 Sobic005G010200--Sobic010G220200 Sobic005G010200--Sobic001G483400 Sobic008G177800 Sobic008G177800 Sobic005G010200--Sobic008G177800 Sobic009G111200 Sobic009G111200 Sobic005G010200--Sobic009G111200 Sobic005G010200--Sobic006G190500 Sobic005G010200--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic005G010200--Sobic002G415600 Sobic009G066800 Sobic009G066800 Sobic005G010200--Sobic009G066800 Sobic005G010200--Sobic009G129000 Sobic010G220200--Sobic010G217800 Sobic010G220200--Sobic005G010200 Sobic010G220200--Sobic002G415600 Sobic010G220200--Sobic006G190500 Sobic006G230800 Sobic006G230800 Sobic010G220200--Sobic006G230800 Sobic003G288600 Sobic003G288600 Sobic010G220200--Sobic003G288600 Sobic006G231100 Sobic006G231100 Sobic010G220200--Sobic006G231100 Sobic010G220200--Sobic008G177800 Sobic010G220200--Sobic006G230900 Sobic010G086200 Sobic010G086200 Sobic009G129000--Sobic010G086200 Sobic005G028700 Sobic005G028700 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G033700 Sobic009G033700 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic009G129000--Sobic004G065500 Sobic009G129000--Sobic010G217800 Sobic006G267200 Sobic006G267200 Sobic009G129000--Sobic006G267200 Sobic010G204600 Sobic010G204600 Sobic009G129000--Sobic010G204600 Sobic001G259600 Sobic001G259600 Sobic002G174200--Sobic001G259600 Sobic009G036000 Sobic009G036000 Sobic002G174200--Sobic009G036000 Sobic002G174200--Sobic001G483400 Sobic001G259700 Sobic001G259700 Sobic002G174200--Sobic001G259700 Sobic007G213800 Sobic007G213800 Sobic002G174200--Sobic007G213800 Sobic006G190100 Sobic006G190100 Sobic002G174200--Sobic006G190100 Sobic002G405600 Sobic002G405600 Sobic002G174200--Sobic002G405600 Sobic002G291900 Sobic002G291900 Sobic002G174200--Sobic002G291900 Sobic003G313800 Sobic003G313800 Sobic002G174200--Sobic003G313800 Sobic004G065500--Sobic006G267200 Sobic001G459800 Sobic001G459800 Sobic004G065500--Sobic001G459800 Sobic003G393900 Sobic003G393900 Sobic004G065500--Sobic003G393900 Sobic007G074000 Sobic007G074000 Sobic004G065500--Sobic007G074000 Sobic004G065500--Sobic010G086200 Sobic004G306300 Sobic004G306300 Sobic004G065500--Sobic004G306300 Sobic003G228900 Sobic003G228900 Sobic004G065500--Sobic003G228900 Sobic004G321300 Sobic004G321300 Sobic004G065500--Sobic004G321300 Sobic009G247900 Sobic009G247900 Sobic004G065500--Sobic009G247900 Sobic006G231200 Sobic006G231200 Sobic006G230900--Sobic006G231200 Sobic006G230900--Sobic006G231100 Sobic002G282300 Sobic002G282300 Sobic006G230900--Sobic002G282300 Sobic006G230900--Sobic007G213800 Sobic006G230900--Sobic010G217800 Sobic006G230900--Sobic002G415600 Sobic003G144700 Sobic003G144700 Sobic006G230900--Sobic003G144700 Sobic003G123600 Sobic003G123600 Sobic006G230900--Sobic003G123600 Sobic003G197200 Sobic003G197200 Sobic006G230900--Sobic003G197200 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190500--Sobic006G190100 Sobic006G190500--Sobic002G415600 Sobic006G190500--Sobic006G230900 Sobic006G190500--Sobic009G111200 Sobic006G190500--Sobic010G217800 Sobic006G190500--Sobic003G144700 Sobic006G190500--Sobic010G220200 Sobic010G217800--Sobic002G415600 Sobic010G217800--Sobic006G230900 Sobic010G217800--Sobic003G144700 Sobic010G217800--Sobic003G123600 Sobic010G217800--Sobic006G231200 Sobic010G217800--Sobic006G231100 Sobic010G217800--Sobic006G267200 Sobic010G217800--Sobic010G220200 Sobic010G217800--Sobic008G177800 Sobic002G082600--Sobic009G036000 Sobic009G036100 Sobic009G036100 Sobic002G082600--Sobic009G036100 Sobic009G159400 Sobic009G159400 Sobic002G082600--Sobic009G159400 Sobic001G320900 Sobic001G320900 Sobic002G082600--Sobic001G320900 Sobic002G082600--Sobic004G065500 Sobic003G387000 Sobic003G387000 Sobic002G082600--Sobic003G387000 Sobic001G407800 Sobic001G407800 Sobic002G082600--Sobic001G407800 Sobic003G334600 Sobic003G334600 Sobic002G082600--Sobic003G334600 Sobic002G082600--Sobic010G086200
Octagon: transcription factors


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