Gene annotation
Transcriptome id Sobic.005G010200.1
Synonym Sb05g000940
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
expressed protein
UniProt C5Y345
Pfam PF04588
Panther DB PTHR28018 PTHR28018:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27760 : Hypoxia-responsive family protein
RAP-DB (Rice) LOC_Os12g02040.1 : hypoxia-responsive family protein, putative, expressed
MaizeGDB (Corn) Zm00025a042172 , Zm00025a040451 , Zm00025a033292
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.005G010200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G220200 haloacid dehalogenase-like hydrolase domain-containing protein 3, putative, expressed -
2 Sobic.001G483400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
3 Sobic.008G177800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
4 Sobic.009G111200 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
5 Sobic.006G190500 expressed protein -
6 Sobic.010G217800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.002G415600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@transcription factor(PubMedID : 30367619)@AP2 domain containing protein, expressed K09286: EREBP-like factor
8 Sobic.009G066800 - -
9 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
10 Sobic.006G231100 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
11 Sobic.010G041700 B-box (BBX) protein(PubMedID : 30626335)@B-box zinc finger family protein, putative, expressed -
12 Sobic.009G183300 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
13 Sobic.006G089300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR2, putative, expressed -
14 Sobic.006G230800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
15 Sobic.002G294700 Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed -
16 Sobic.006G230900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
17 Sobic.010G234600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed -
18 Sobic.003G123600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.003G387000 expressed protein -
20 Sobic.006G230500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -


Gene co-expression network
sample Sobic005G010200 Sobic005G010200 Sobic010G220200 Sobic010G220200 Sobic005G010200--Sobic010G220200 Sobic001G483400 Sobic001G483400 Sobic005G010200--Sobic001G483400 Sobic008G177800 Sobic008G177800 Sobic005G010200--Sobic008G177800 Sobic009G111200 Sobic009G111200 Sobic005G010200--Sobic009G111200 Sobic006G190500 Sobic006G190500 Sobic005G010200--Sobic006G190500 Sobic010G217800 Sobic010G217800 Sobic005G010200--Sobic010G217800 Sobic002G415600 Sobic002G415600 Sobic005G010200--Sobic002G415600 Sobic009G066800 Sobic009G066800 Sobic005G010200--Sobic009G066800 Sobic009G129000 Sobic009G129000 Sobic005G010200--Sobic009G129000 Sobic010G220200--Sobic010G217800 Sobic010G220200--Sobic005G010200 Sobic010G220200--Sobic002G415600 Sobic010G220200--Sobic006G190500 Sobic006G230800 Sobic006G230800 Sobic010G220200--Sobic006G230800 Sobic003G288600 Sobic003G288600 Sobic010G220200--Sobic003G288600 Sobic006G231100 Sobic006G231100 Sobic010G220200--Sobic006G231100 Sobic010G220200--Sobic008G177800 Sobic006G230900 Sobic006G230900 Sobic010G220200--Sobic006G230900 Sobic001G483400--Sobic005G010200 Sobic001G483400--Sobic010G220200 Sobic001G483400--Sobic009G129000 Sobic002G174200 Sobic002G174200 Sobic001G483400--Sobic002G174200 Sobic004G065500 Sobic004G065500 Sobic001G483400--Sobic004G065500 Sobic001G483400--Sobic006G230900 Sobic001G483400--Sobic006G190500 Sobic001G483400--Sobic010G217800 Sobic002G082600 Sobic002G082600 Sobic001G483400--Sobic002G082600 Sobic002G294700 Sobic002G294700 Sobic008G177800--Sobic002G294700 Sobic008G177800--Sobic006G231100 Sobic010G234600 Sobic010G234600 Sobic008G177800--Sobic010G234600 Sobic004G286600 Sobic004G286600 Sobic008G177800--Sobic004G286600 Sobic008G177800--Sobic002G415600 Sobic008G177800--Sobic010G217800 Sobic009G255500 Sobic009G255500 Sobic008G177800--Sobic009G255500 Sobic008G177800--Sobic006G230900 Sobic001G077700 Sobic001G077700 Sobic008G177800--Sobic001G077700 Sobic009G111200--Sobic006G190500 Sobic009G111200--Sobic002G415600 Sobic009G111200--Sobic006G230800 Sobic001G481600 Sobic001G481600 Sobic009G111200--Sobic001G481600 Sobic003G123600 Sobic003G123600 Sobic009G111200--Sobic003G123600 Sobic009G111200--Sobic005G010200 Sobic006G231200 Sobic006G231200 Sobic009G111200--Sobic006G231200 Sobic005G103500 Sobic005G103500 Sobic009G111200--Sobic005G103500 Sobic009G111200--Sobic010G217800 Sobic006G190500--Sobic006G230800 Sobic006G190500--Sobic003G123600 Sobic006G190100 Sobic006G190100 Sobic006G190500--Sobic006G190100 Sobic006G190500--Sobic002G415600 Sobic006G190500--Sobic006G230900 Sobic006G190500--Sobic009G111200 Sobic006G190500--Sobic010G217800 Sobic003G144700 Sobic003G144700 Sobic006G190500--Sobic003G144700 Sobic006G190500--Sobic010G220200 Sobic010G217800--Sobic002G415600 Sobic010G217800--Sobic006G230900 Sobic010G217800--Sobic003G144700 Sobic010G217800--Sobic003G123600 Sobic010G217800--Sobic006G231200 Sobic010G217800--Sobic006G231100 Sobic006G267200 Sobic006G267200 Sobic010G217800--Sobic006G267200 Sobic010G217800--Sobic010G220200 Sobic010G217800--Sobic008G177800 Sobic002G415600--Sobic010G217800 Sobic002G415600--Sobic003G123600 Sobic002G415600--Sobic006G230900 Sobic002G415600--Sobic003G144700 Sobic010G234700 Sobic010G234700 Sobic002G415600--Sobic010G234700 Sobic002G415600--Sobic006G190500 Sobic002G415600--Sobic006G231100 Sobic002G415600--Sobic008G177800 Sobic002G415600--Sobic010G234600 Sobic002G036150 Sobic002G036150 Sobic009G066800--Sobic002G036150 Sobic009G066800--Sobic005G010200 Sobic010G200700 Sobic010G200700 Sobic009G066800--Sobic010G200700 Sobic009G247300 Sobic009G247300 Sobic009G066800--Sobic009G247300 Sobic002G036100 Sobic002G036100 Sobic009G066800--Sobic002G036100 Sobic009G066800--Sobic009G111200 Sobic006G089300 Sobic006G089300 Sobic009G066800--Sobic006G089300 Sobic010G041700 Sobic010G041700 Sobic009G066800--Sobic010G041700 Sobic002G359300 Sobic002G359300 Sobic009G066800--Sobic002G359300 Sobic010G086200 Sobic010G086200 Sobic009G129000--Sobic010G086200 Sobic005G028700 Sobic005G028700 Sobic009G129000--Sobic005G028700 Sobic009G183300 Sobic009G183300 Sobic009G129000--Sobic009G183300 Sobic009G033700 Sobic009G033700 Sobic009G129000--Sobic009G033700 Sobic009G200700 Sobic009G200700 Sobic009G129000--Sobic009G200700 Sobic009G129000--Sobic004G065500 Sobic009G129000--Sobic010G217800 Sobic009G129000--Sobic006G267200 Sobic010G204600 Sobic010G204600 Sobic009G129000--Sobic010G204600
Octagon: transcription factors


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