Gene annotation
| Transcriptome id | Sobic.002G374100.1 |
|---|---|
| Synonym | JAZ2, Sb02g039190, JAZ, TIFY10B |
| Functional annotation | tran- scriptional repressor JASMONATE ZIM-DOMAIN (PubMedID : 25711704) zinc-finger protein, putative, expressed |
| UniProt | C5XE09 |
| Pfam | PF09425 PF06200 |
| Panther DB | PTHR33077 PTHR33077:SF9 |
| NCBI CDD | - |
| KEGG Orthology | K13464; jasmonate ZIM domain-containing protein |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT1G74950 : TIFY domain/Divergent CCT motif family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g42370.1 : zinc-finger protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a048755 , Zm00025a015208 |
| Brachypodium | KQJ94490 , KQJ94491 |
| Barley | HORVU2Hr1G031310.10 , HORVU2Hr1G031310.1 , HORVU2Hr1G031310.2 , HORVU2Hr1G031310.3 , HORVU2Hr1G031310.4 , HORVU2Hr1G031310.5 , HORVU2Hr1G031310.6 , HORVU2Hr1G031310.7 , HORVU2Hr1G031310.8 , HORVU2Hr1G031310.9 |
| Wheat | TraesCS2D02G176800 |
| Populus | - |
JBrowse
| Sobic.002G374100 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.002G294700 | Trihelix Family(PubMedID : 24864043)@transcription factor like protein, putative, expressed | - |
| 2 | Sobic.010G246000 | zinc finger, C3HC4 type domain containing protein, expressed | - |
| 3 | Sobic.001G516600 | AMP-binding domain containing protein, expressed | K10526: OPC-8:0 CoA ligase 1 |
| 4 | Sobic.002G354900 | "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@gibberellin response modulator protein, putative, expressed | - |
| 5 | Sobic.010G228000 | Protein kinase domain containing protein, expressed | - |
| 6 | Sobic.004G036600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@activator of 90 kDa heat shock protein ATPase homolog, putative, expressed | - |
| 7 | Sobic.002G353400 | transporter-related, putative, expressed | K15285: solute carrier family 35, member E3 |
| 8 | Sobic.008G177800 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@2-aminoethanethiol dioxygenase, putative, expressed | K10712: cysteamine dioxygenase |
| 9 | Sobic.002G118600 | SNARE domain containing protein, putative, expressed | K18211: synaptosomal-associated protein 25 |
| 10 | Sobic.004G286600 | Protecting the plants under varied stress situations(PubMedID : 26536883)@dehydrin, putative, expressed | - |
| 11 | Sobic.002G131800 | copine, putative, expressed | K16280: E3 ubiquitin-protein ligase RGLG |
| 12 | Sobic.007G151100 | 12-oxophytodienoate reductase, putative, expressed | K05894: 12-oxophytodienoic acid reductase |
| 13 | Sobic.001G341600 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tyrosine protein kinase domain containing protein, putative, expressed | - |
| 14 | Sobic.006G231100 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@wound induced protein, putative, expressed | - |
| 15 | Sobic.002G140300 | plastocyanin-like domain containing protein, putative, expressed | - |
| 16 | Sobic.003G019200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 17 | Sobic.001G538866 | - | - |
| 18 | Sobic.006G179500 | protein kinase APK1B, chloroplast precursor, putative, expressed | - |
| 19 | Sobic.001G206400 | fiber protein Fb34, putative, expressed | - |
| 20 | Sobic.009G129000 | E3 ubiquitin-protein ligase MGRN1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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