Gene annotation
Transcriptome id Sobic.001G009500.3
Synonym Sb01g000930
Functional annotation -
UniProt C5WS20
Pfam -
Panther DB PTHR34291 PTHR34291:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65660 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAD dependent epimerase/dehydratase family protein, putative, expressed K10046: GDP-D-mannose 3', 5'-epimerase
2 Sobic.008G106700 isoflavone reductase, putative, expressed -
3 Sobic.003G343900 expressed protein -
4 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
5 Sobic.009G074100 prenylated rab acceptor, putative, expressed -
6 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.004G100700 ethylene-responsive transcription factor TINY, putative, expressed K09286: EREBP-like factor
8 Sobic.004G075000 expressed protein -
9 Sobic.008G186100 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.003G344600 BAG domain containing protein, expressed -
11 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
12 Sobic.002G393000 pyrrolidone-carboxylate peptidase, putative, expressed K01304: pyroglutamyl-peptidase
13 Sobic.003G379800 armadillo/beta-catenin repeat family protein, putative, expressed -
14 Sobic.003G417350 - -
15 Sobic.010G259900 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
16 Sobic.004G061200 expressed protein -
17 Sobic.009G179950 - -
18 Sobic.006G092500 expressed protein -
19 Sobic.004G212900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@B4-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with B4 subfamily conserved sequence, expressed -
20 Sobic.001G038900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF567 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G009500 Sobic001G009500 Sobic001G247600 Sobic001G247600 Sobic001G009500--Sobic001G247600 Sobic008G106700 Sobic008G106700 Sobic001G009500--Sobic008G106700 Sobic003G343900 Sobic003G343900 Sobic001G009500--Sobic003G343900 Sobic001G389000 Sobic001G389000 Sobic001G009500--Sobic001G389000 Sobic009G074100 Sobic009G074100 Sobic001G009500--Sobic009G074100 Sobic001G119400 Sobic001G119400 Sobic001G009500--Sobic001G119400 Sobic004G100700 Sobic004G100700 Sobic001G009500--Sobic004G100700 Sobic004G075000 Sobic004G075000 Sobic001G009500--Sobic004G075000 Sobic008G186100 Sobic008G186100 Sobic001G009500--Sobic008G186100 Sobic007G184600 Sobic007G184600 Sobic001G247600--Sobic007G184600 Sobic002G200600 Sobic002G200600 Sobic001G247600--Sobic002G200600 Sobic004G225900 Sobic004G225900 Sobic001G247600--Sobic004G225900 Sobic009G077800 Sobic009G077800 Sobic001G247600--Sobic009G077800 Sobic003G417800 Sobic003G417800 Sobic001G247600--Sobic003G417800 Sobic001G247600--Sobic001G119400 Sobic009G139400 Sobic009G139400 Sobic001G247600--Sobic009G139400 Sobic004G205100 Sobic004G205100 Sobic001G247600--Sobic004G205100 Sobic001G177800 Sobic001G177800 Sobic001G247600--Sobic001G177800 Sobic004G046200 Sobic004G046200 Sobic008G106700--Sobic004G046200 Sobic001G500000 Sobic001G500000 Sobic008G106700--Sobic001G500000 Sobic006G044100 Sobic006G044100 Sobic008G106700--Sobic006G044100 Sobic003G084400 Sobic003G084400 Sobic008G106700--Sobic003G084400 Sobic003G079400 Sobic003G079400 Sobic008G106700--Sobic003G079400 Sobic009G183400 Sobic009G183400 Sobic008G106700--Sobic009G183400 Sobic009G179900 Sobic009G179900 Sobic008G106700--Sobic009G179900 Sobic001G139100 Sobic001G139100 Sobic008G106700--Sobic001G139100 Sobic006G199800 Sobic006G199800 Sobic008G106700--Sobic006G199800 Sobic001G494000 Sobic001G494000 Sobic003G343900--Sobic001G494000 Sobic003G343900--Sobic001G009500 Sobic010G252500 Sobic010G252500 Sobic003G343900--Sobic010G252500 Sobic003G343900--Sobic001G389000 Sobic003G343900--Sobic008G106700 Sobic003G343900--Sobic009G179900 Sobic005G093000 Sobic005G093000 Sobic003G343900--Sobic005G093000 Sobic003G429000 Sobic003G429000 Sobic003G343900--Sobic003G429000 Sobic003G417350 Sobic003G417350 Sobic003G343900--Sobic003G417350 Sobic009G159400 Sobic009G159400 Sobic001G389000--Sobic009G159400 Sobic003G037800 Sobic003G037800 Sobic001G389000--Sobic003G037800 Sobic004G101300 Sobic004G101300 Sobic001G389000--Sobic004G101300 Sobic004G340900 Sobic004G340900 Sobic001G389000--Sobic004G340900 Sobic010G259600 Sobic010G259600 Sobic001G389000--Sobic010G259600 Sobic006G092500 Sobic006G092500 Sobic001G389000--Sobic006G092500 Sobic001G389000--Sobic001G139100 Sobic001G038900 Sobic001G038900 Sobic001G389000--Sobic001G038900 Sobic001G389000--Sobic003G429000 Sobic005G011300 Sobic005G011300 Sobic009G074100--Sobic005G011300 Sobic009G074100--Sobic004G100700 Sobic004G306300 Sobic004G306300 Sobic009G074100--Sobic004G306300 Sobic009G074100--Sobic001G389000 Sobic003G393900 Sobic003G393900 Sobic009G074100--Sobic003G393900 Sobic001G169500 Sobic001G169500 Sobic009G074100--Sobic001G169500 Sobic001G459800 Sobic001G459800 Sobic009G074100--Sobic001G459800 Sobic003G228900 Sobic003G228900 Sobic009G074100--Sobic003G228900 Sobic009G074100--Sobic004G340900 Sobic001G119400--Sobic009G183400 Sobic001G423800 Sobic001G423800 Sobic001G119400--Sobic001G423800 Sobic002G393000 Sobic002G393000 Sobic001G119400--Sobic002G393000 Sobic009G008900 Sobic009G008900 Sobic001G119400--Sobic009G008900 Sobic001G119400--Sobic009G139400 Sobic001G119400--Sobic001G038900 Sobic006G275200 Sobic006G275200 Sobic001G119400--Sobic006G275200 Sobic006G099900 Sobic006G099900 Sobic001G119400--Sobic006G099900 Sobic001G119400--Sobic003G417800 Sobic004G100700--Sobic005G011300 Sobic002G188900 Sobic002G188900 Sobic004G100700--Sobic002G188900 Sobic001G140900 Sobic001G140900 Sobic004G100700--Sobic001G140900 Sobic001G108200 Sobic001G108200 Sobic004G100700--Sobic001G108200 Sobic004G100700--Sobic001G169500 Sobic004G141200 Sobic004G141200 Sobic004G100700--Sobic004G141200 Sobic004G100700--Sobic003G393900 Sobic004G301000 Sobic004G301000 Sobic004G100700--Sobic004G301000 Sobic001G367600 Sobic001G367600 Sobic004G100700--Sobic001G367600 Sobic007G155000 Sobic007G155000 Sobic004G075000--Sobic007G155000 Sobic004G075000--Sobic002G393000 Sobic004G075000--Sobic001G038900 Sobic003G364600 Sobic003G364600 Sobic004G075000--Sobic003G364600 Sobic004G061200 Sobic004G061200 Sobic004G075000--Sobic004G061200 Sobic004G075000--Sobic009G159400 Sobic001G477600 Sobic001G477600 Sobic004G075000--Sobic001G477600 Sobic006G143400 Sobic006G143400 Sobic004G075000--Sobic006G143400 Sobic003G393700 Sobic003G393700 Sobic004G075000--Sobic003G393700 Sobic008G186100--Sobic005G011300 Sobic002G287100 Sobic002G287100 Sobic008G186100--Sobic002G287100 Sobic008G186100--Sobic004G100700 Sobic008G186100--Sobic001G169500 Sobic010G029700 Sobic010G029700 Sobic008G186100--Sobic010G029700 Sobic006G249300 Sobic006G249300 Sobic008G186100--Sobic006G249300 Sobic008G186100--Sobic001G139100 Sobic002G250000 Sobic002G250000 Sobic008G186100--Sobic002G250000 Sobic008G186100--Sobic006G092500
Octagon: transcription factors


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